Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3k08
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative guan... 185 3e-47
AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical ... 185 3e-47
AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical ... 185 3e-47
Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical pr... 139 1e-33
U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine rec... 28 4.9
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 28 4.9
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 28 4.9
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 28 4.9
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 28 4.9
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 4.9
AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear recep... 28 4.9
AF016445-12|AAC69062.1| 374|Caenorhabditis elegans Nuclear horm... 28 4.9
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 6.5
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 6.5
U88182-1|AAB42309.1| 101|Caenorhabditis elegans Hypothetical pr... 27 8.6
U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative
guanylate-binding protein protein.
Length = 573
Score = 185 bits (450), Expect = 3e-47
Identities = 94/168 (55%), Positives = 118/168 (70%), Gaps = 8/168 (4%)
Frame = +1
Query: 160 PRGPHGVQVVDT--GPDHTFTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDF 333
P+ P V+VV+ DH+F L+ E L+ +LL V D+ V VI VAGA+RKGKSFLL+F
Sbjct: 27 PKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNF 86
Query: 334 FLRYMHYK------YXXXXXXXXXXXXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLD 495
FLRY+ ++ PL GFSWRGGSERDT GIL+WSE F
Sbjct: 87 FLRYLTWRSKADKVMGEVELDNSQWMSPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDK 146
Query: 496 DGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQ 639
+GE++A++L+DTQGAFDS+STV+DCAT+FALSTM+SSVQIYNLSQNIQ
Sbjct: 147 NGEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQ 194
>AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical
protein Y54G2A.2b protein.
Length = 535
Score = 185 bits (450), Expect = 3e-47
Identities = 94/168 (55%), Positives = 118/168 (70%), Gaps = 8/168 (4%)
Frame = +1
Query: 160 PRGPHGVQVVDT--GPDHTFTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDF 333
P+ P V+VV+ DH+F L+ E L+ +LL V D+ V VI VAGA+RKGKSFLL+F
Sbjct: 27 PKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNF 86
Query: 334 FLRYMHYK------YXXXXXXXXXXXXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLD 495
FLRY+ ++ PL GFSWRGGSERDT GIL+WSE F
Sbjct: 87 FLRYLTWRSKADKVMGEVELDNSQWMSPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDK 146
Query: 496 DGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQ 639
+GE++A++L+DTQGAFDS+STV+DCAT+FALSTM+SSVQIYNLSQNIQ
Sbjct: 147 NGEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQ 194
>AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical
protein Y54G2A.2a protein.
Length = 573
Score = 185 bits (450), Expect = 3e-47
Identities = 94/168 (55%), Positives = 118/168 (70%), Gaps = 8/168 (4%)
Frame = +1
Query: 160 PRGPHGVQVVDT--GPDHTFTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDF 333
P+ P V+VV+ DH+F L+ E L+ +LL V D+ V VI VAGA+RKGKSFLL+F
Sbjct: 27 PKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNF 86
Query: 334 FLRYMHYK------YXXXXXXXXXXXXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLD 495
FLRY+ ++ PL GFSWRGGSERDT GIL+WSE F
Sbjct: 87 FLRYLTWRSKADKVMGEVELDNSQWMSPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDK 146
Query: 496 DGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQ 639
+GE++A++L+DTQGAFDS+STV+DCAT+FALSTM+SSVQIYNLSQNIQ
Sbjct: 147 NGEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQ 194
>Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical
protein Y41E3.3 protein.
Length = 520
Score = 139 bits (337), Expect = 1e-33
Identities = 71/144 (49%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Frame = +1
Query: 211 FTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXXXXXX 390
F L+E AL S+L ++ +V+ISVAGAFRKGKSFLL+FFL Y++ +
Sbjct: 43 FRLNESALNSVLGHSACANKKIVIISVAGAFRKGKSFLLNFFLEYLYSLHKSQQSDSSLE 102
Query: 391 XXXXD-PLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRD 567
D L GF WR G +RDT GI +W E GE A++L+DTQG FD+ ST +
Sbjct: 103 WLTDDCQLHGFHWRAGVKRDTVGIWLWGEPIMIESVTGEMFAVVLMDTQGTFDNNSTYQQ 162
Query: 568 CATVFALSTMLSSVQIYNLSQNIQ 639
C TVFALST++SSVQIYN+ NIQ
Sbjct: 163 CMTVFALSTIVSSVQIYNVVDNIQ 186
>U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine
receptor, class v protein32 protein.
Length = 342
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 238 SLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHY 354
S+LL+ + D +++ + SFL +F+ Y HY
Sbjct: 49 SILLQHCIADLLAMLVFFVAVDARSYSFLKEFYFEYQHY 87
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 127 MAHVTEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVRD 267
MAH + P P+ P + V P+HT LD+ +S + RD
Sbjct: 25 MAHASSVPGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD 71
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 127 MAHVTEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVRD 267
MAH + P P+ P + V P+HT LD+ +S + RD
Sbjct: 40 MAHASSVPGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD 86
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 127 MAHVTEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVRD 267
MAH + P P+ P + V P+HT LD+ +S + RD
Sbjct: 137 MAHASSVPGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD 183
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 127 MAHVTEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVRD 267
MAH + P P+ P + V P+HT LD+ +S + RD
Sbjct: 139 MAHASSVPGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD 185
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 127 MAHVTEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVRD 267
MAH + P P+ P + V P+HT LD+ +S + RD
Sbjct: 1114 MAHASSVPGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD 1160
>AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear receptor
NHR-57 protein.
Length = 378
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 622 GCISERTTASWTERTRSRSLAPWIHCRRRLACLAILS 512
G I+ + A++ RT S +LAP CR++ C+ +S
Sbjct: 27 GAIACKACAAFFRRTTSMNLAPKFVCRKKNECVIKMS 63
>AF016445-12|AAC69062.1| 374|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 57 protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 622 GCISERTTASWTERTRSRSLAPWIHCRRRLACLAILS 512
G I+ + A++ RT S +LAP CR++ C+ +S
Sbjct: 23 GAIACKACAAFFRRTTSMNLAPKFVCRKKNECVIKMS 59
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = -2
Query: 602 DSIVDRANTVAQSRTVDSLSKAPCVSSNIIATFSPSSSVALNISDHMSMPVVSLSEPPRQ 423
+ ++++ A + D+++ P +SN + SP+SSVA S ++ VS + P
Sbjct: 230 NDVLEKGLEEAHQHSTDAIAPGPNGASNQQSPSSPTSSVATISSTMPAVGSVSPNSHPNS 289
Query: 422 LKPWR 408
W+
Sbjct: 290 TVVWK 294
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = -2
Query: 602 DSIVDRANTVAQSRTVDSLSKAPCVSSNIIATFSPSSSVALNISDHMSMPVVSLSEPPRQ 423
+ ++++ A + D+++ P +SN + SP+SSVA S ++ VS + P
Sbjct: 230 NDVLEKGLEEAHQHSTDAIAPGPNGASNQQSPSSPTSSVATISSTMPAVGSVSPNSHPNS 289
Query: 422 LKPWR 408
W+
Sbjct: 290 TVVWK 294
>U88182-1|AAB42309.1| 101|Caenorhabditis elegans Hypothetical
protein C53C11.4 protein.
Length = 101
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -1
Query: 612 LNGRQHRGQSEHG---RAVSHRGFTVEG 538
L G HRG++ HG R +HRG T G
Sbjct: 30 LRGETHRGETHHGETHRGEAHRGETHRG 57
>U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical
protein F45F2.5 protein.
Length = 556
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 578 TVAQSRTVDSLSKAPCVSSNIIATFSPSSSVALNISDHMSMPVVSLS 438
T Q + S SK SNIIA F SVA+N+ + +S+ ++ S
Sbjct: 173 TFMQMHFIFSNSKISLKRSNIIAKFGLMHSVAVNLWNWLSICLIKSS 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,099
Number of Sequences: 27780
Number of extensions: 265189
Number of successful extensions: 862
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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