Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k03
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   0.60 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   3.2  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    23   4.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           23   4.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    23   5.6  

>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 174 HRQNPTEFLCEHYFLSXS*ILRPISVRRNLYRHRQSFLQ 58
           H  NP++ L EH F++   I   + ++  L+R  ++  Q
Sbjct: 186 HSHNPSQLLFEHPFMALGLIFGSVVLKEWLFRKTRTVAQ 224


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 87  LYRHRQSFLQSPRPXNKYLIXEIL 16
           LYR  Q+F  S    NK L+ ++L
Sbjct: 646 LYRRNQAFQYSSTVTNKQLVLQVL 669


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 146 VNTIFYHXHKFFDRYQSVEIFIGIVNHFFNL 54
           + ++F     F DRY    +++G+V+ F  L
Sbjct: 399 IGSVFSLQPYFRDRYFKNHVYLGVVDKFHKL 429


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 177 EHRQNPTEFLCEHYFLSXS*ILRPISVRRNLYRHRQSFLQ 58
           E+ ++ T      + L  + ++R ISVR   +RH  +F++
Sbjct: 49  ENLEDLTLLKTSAFELKLNELIREISVRGKYFRHANTFVE 88


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 173 IVKTLQSFYVNTIFYHXHKFFDRY 102
           ++  L  F++ TI YH H    RY
Sbjct: 33  VIGKLNRFFMVTIPYHLHVLDSRY 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,395
Number of Sequences: 5004
Number of extensions: 6412
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)