Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k03
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    25   5.6  
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    25   5.6  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 167 KTLQSFY--VNTIFYHXHKFFDRYQSVEIFIGIVNHFFNLLVR 45
           K+LQS Y  +  +    H F   Y+S+ +  GIV  F++  +R
Sbjct: 40  KSLQSKYGYILGVLASIHSFCLLYESINMTFGIVATFYHYQIR 82


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 152 FYVNTIFYHXHKFFDRYQSVEIFIGIVNH 66
           FYV   F    KF  RYQ + +F G+++H
Sbjct: 15  FYVQCFFIF--KF--RYQCINLFFGVISH 39


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 146 VNTIFYHXHKFFDRYQSVEIFIGIVNHFFNLLV 48
           V+ + YH + +  +Y S    + IV+H+F+  +
Sbjct: 88  VSHMLYHTNTYLFQYISKYCSVSIVSHYFHFFL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,391
Number of Sequences: 27780
Number of extensions: 35607
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)