Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3k03
         (197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   3.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   3.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   5.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    19   7.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -1

Query: 137 IFYHXHKFFDRYQSV----EIFIGIVNHFF 60
           I Y  +  F++ Q+     E F+GI+N+ F
Sbjct: 387 ILYDFNDIFEKDQASFLERERFLGIINNIF 416


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -1

Query: 137 IFYHXHKFFDRYQSV----EIFIGIVNHFF 60
           I Y  +  F++ Q+     E F+GI+N+ F
Sbjct: 387 ILYDFNDIFEKDQASFLERERFLGIINNIF 416


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 92  EIFIGIVNHF 63
           + FIGIVN F
Sbjct: 477 DAFIGIVNQF 486


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 66  FLQSPRPXN 40
           FL++PRP N
Sbjct: 188 FLKNPRPCN 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,512
Number of Sequences: 438
Number of extensions: 349
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)