Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j24
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    31   0.23 
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    30   0.40 
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    29   0.94 
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac...    29   0.94 
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.8  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    26   6.6  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   6.6  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.6  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   8.7  
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy...    25   8.7  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = +1

Query: 460 VDQSFLERGDEFNTGRNEFSNSTSRLINNFFEMSQIDCNICRDDAIFDGTERIQPAEVSE 639
           V+Q  LER D    G N +SN +S   +   ++  ++ ++    A     +     +++E
Sbjct: 539 VEQLELERQDLKQAGENHYSNLSS---DYETQIKSLESSLTNSQAECVSFQE----KINE 591

Query: 640 IISKIDALDIQLNEASK 690
           + S+ID L ++LNEA+K
Sbjct: 592 LNSQIDELKLKLNEANK 608


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +1

Query: 325 LKRCKNNIDDEETSLAVLKDDSYANENKTQLSANVLATSTPQKDNVDQSFLERGDEFNTG 504
           +++C++NI+   + +  +   + +++N   LSA V   +T      D S   +G     G
Sbjct: 80  VQKCRDNINVMASEVVNMLLVASSSKNLEVLSACVDCFAT----FCDNS--GKGSPATFG 133

Query: 505 RNEFSNSTSRLINNFFEMSQ-IDC 573
            NEF ++ + L+N+FFE+S+ IDC
Sbjct: 134 -NEFHSAFNNLVNSFFELSKGIDC 156


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
 Frame = +1

Query: 367 LAVLKDDSYANENKTQLSANVLATSTPQKD------NVDQSFLERGDEFNTGRNEFSNST 528
           L+++ DD    E   QLS N  +++  ++D      ++D     +GD  +   N  +N+ 
Sbjct: 12  LSLIYDDESKVEKSKQLSTNASSSNFVKEDQIPSNLSIDNINTPQGDPIDK-NNLNTNTE 70

Query: 529 SRLIN--NFFEMSQIDCNICR---DDAIFDGTERI-QPAEVSEIISKIDALDIQL 675
           + L N  NF  +S  +    +   ++ +F  TE I Q  E  +  +KID LD+ L
Sbjct: 71  NNLPNIVNFQNISSANSGEIKQKDNEILFSSTEDINQHKENYQDENKIDLLDVAL 125


>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 203 DLPRSPSSLFVIFYTKLKD 147
           D+P+ PSS F++FY +L++
Sbjct: 145 DVPKKPSSAFILFYKELRN 163


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +1

Query: 388 SYANENKTQLSANVLATSTPQKDNVDQSFL--ERGDEFNTGRNEFSNSTSR---LINNFF 552
           S A E    L+   L TS     NV+Q+FL   R  +   G N F++S ++    +    
Sbjct: 134 SVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGT 193

Query: 553 EMSQIDCNIC 582
            +SQ   N C
Sbjct: 194 NVSQSSSNCC 203


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +1

Query: 316 IKSLKRCKNNIDDEETSLAVLKDDSYANENKTQLSANVLATSTPQKDNVDQSFLERGDEF 495
           +   +  +N   + E SL +L +    N++K  +    L  +  +KDN+    LE+G   
Sbjct: 574 VSKFEDLENKSMESEQSLQLLSESE--NDDKPLIDLIPLL-AIKRKDNLVSGVLEKGKST 630

Query: 496 NTGRNEFSNS 525
           +T + +F  S
Sbjct: 631 STSKTKFDTS 640


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 530 EVELLNSFLPVLNSSPLSRKLWSTL 456
           E+ELLN+ LP L+   L+R  +S +
Sbjct: 34  EIELLNTRLPKLSKKALARNRYSNI 58


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 301 LYFSMIKSLKRCKNNIDDEETSLAVLKDDSYANENKTQ 414
           LYF  I   ++C  +++   T L+V +  S  ++++TQ
Sbjct: 172 LYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQ 209


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -1

Query: 603 IENSIVTANITVDLTHFK----KIVD*SRSRITKFI 508
           I   + T+++T D THFK    KI+D S+  +  F+
Sbjct: 460 ISAEVQTSSVTPDYTHFKEEVRKIIDSSKEPLIPFL 495


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 55  SQHYIAFDFSKFSSL*VHLVIELLIF*FTRASLSLV 162
           +Q  I+F+FS+FSS  + ++  L+I+   R  L L+
Sbjct: 50  AQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLI 85


>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 152

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 508 NEFSNSTSRLINNFFEMSQIDCN--ICRDDAIFDGTERIQPAEVSEIISKIDALDIQLNE 681
           +E  N+    ++ F +   I+    +   D+  DG + I  A   E ISK++  +  +N+
Sbjct: 12  SELRNAFETALHEFKKYHSIEAKGGVSDPDSRLDGEKLISAARTEESISKLEEGEQMINQ 71

Query: 682 ASKGS-TGSINLSDFS 726
            ++ +  G  ++  F+
Sbjct: 72  QTETTLEGDTHIQQFA 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,146
Number of Sequences: 5004
Number of extensions: 51709
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)