Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j24
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 29 3.0
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521... 29 3.9
04_01_0179 + 2021977-2024890,2025117-2025610 29 3.9
03_05_1092 - 30331323-30331463,30331562-30331648,30331825-303320... 29 5.2
12_01_0469 + 3663569-3663725,3664192-3664253 28 6.9
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 28 6.9
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 28 9.1
01_06_1806 + 40012952-40016836 28 9.1
01_06_0782 + 31969677-31969767,31969863-31969960,31970059-319702... 28 9.1
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 583 RDDAIFDGTERIQPAEVSEIISKIDALDIQLNEASKGSTGSINLSD 720
RD++I + ER+Q E + +K+D L +L++ K G++ D
Sbjct: 230 RDESIPEAWERLQEYETELLAAKLDLLMKRLDDQEKRPQGTVKALD 275
>07_01_0688 -
5211484-5211626,5211730-5211826,5211930-5212105,
5212240-5212631,5212712-5212960,5213046-5213188,
5213283-5213402,5214491-5214835
Length = 554
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 568 DCNICRDDAIFDGTERIQPAEVSEIISKIDALDIQLNEASKGSTGSINLS 717
+ ++ + I DG I ++ EI +KI LDI + + KG G +N S
Sbjct: 214 EADVINNRLIVDGANGIGGLKLEEIKAKISGLDIHVRNSGKGE-GILNES 262
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 580 CRDDAIFDGTERIQPAEVSEIISKIDALDIQLNEASKGSTGSI 708
CR+ + D ++ + + + ID LDI LN + G TG I
Sbjct: 568 CRNLELLDLSDNALSGRIPDELCAIDGLDIALNLSRNGLTGPI 610
>03_05_1092 -
30331323-30331463,30331562-30331648,30331825-30332085,
30332231-30332636,30333702-30334240
Length = 477
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 346 IDDEETSLAVLKDDSYANENKTQLSANVLATSTPQKDNVDQSFLERGD 489
+D + LAVL D NK + A T+ P VD++ GD
Sbjct: 168 VDAADRPLAVLSDIEIYKHNKEERIARTWGTTAPGLPYVDEAITNAGD 215
>12_01_0469 + 3663569-3663725,3664192-3664253
Length = 72
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 178 KEDGDRGKSKATAVAAVNLVSQ 243
+EDGDRG+ A A+AAV V++
Sbjct: 31 EEDGDRGREVAIAIAAVAAVAR 52
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 262 CIANAAKDSGQPWLYFSMIKSLK-RC 336
C+ AA +SG+PWL++ + RC
Sbjct: 333 CVFKAANESGKPWLWWDYVHDFSIRC 358
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 616 IQPAEVSEIISKIDALDIQLNEASKG 693
I P V +I+ +DA+ I EASKG
Sbjct: 662 ISPQHVKDIVVLVDAITIVFEEASKG 687
>01_06_1806 + 40012952-40016836
Length = 1294
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 493 FNTGRNEFSNSTSRLINNFFEMSQID 570
FN+ N FS S I+NF ++S +D
Sbjct: 804 FNSSSNHFSGSLDESISNFTQLSTLD 829
>01_06_0782 +
31969677-31969767,31969863-31969960,31970059-31970235,
31970367-31970467,31970626-31970701,31970827-31970886,
31970979-31971215,31971612-31971686,31971981-31972039,
31972110-31972201,31972463-31972623,31972964-31973176
Length = 479
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 232 LVSQVLDEAYCIANAAKDSGQPW 300
+V+ LD + NAAKD G PW
Sbjct: 427 IVAVFLDNTLEVKNAAKDRGMPW 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,185
Number of Sequences: 37544
Number of extensions: 265465
Number of successful extensions: 693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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