Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j24
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF106573-8|ABC48249.1| 309|Caenorhabditis elegans Hypothetical ... 29 3.5
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p... 28 6.2
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 28 6.2
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 28 6.2
Z79759-7|CAE18047.1| 239|Caenorhabditis elegans Hypothetical pr... 28 8.1
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 8.1
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 8.1
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 8.1
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
protein K04D7.5b protein.
Length = 1287
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +1
Query: 355 EETSLAVLKDDSYA-NENKTQLSANVLATSTPQKDNVDQSFLERGDEFNTGRNEFSNSTS 531
+ETS V ++ Y N A +A P DNVD R R E N
Sbjct: 216 DETSEDVQNEEDYVLNMTLNDTRAESVAP-IPTLDNVDDDGFYRDFVTGINRTEKDNDNL 274
Query: 532 RLINNFFEMSQIDCNICRDDAI 597
+++ + D N+C DD +
Sbjct: 275 EVLDTEDDPDDEDYNVCADDGL 296
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
protein K04D7.5a protein.
Length = 1338
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +1
Query: 355 EETSLAVLKDDSYA-NENKTQLSANVLATSTPQKDNVDQSFLERGDEFNTGRNEFSNSTS 531
+ETS V ++ Y N A +A P DNVD R R E N
Sbjct: 216 DETSEDVQNEEDYVLNMTLNDTRAESVAP-IPTLDNVDDDGFYRDFVTGINRTEKDNDNL 274
Query: 532 RLINNFFEMSQIDCNICRDDAI 597
+++ + D N+C DD +
Sbjct: 275 EVLDTEDDPDDEDYNVCADDGL 296
>AF106573-8|ABC48249.1| 309|Caenorhabditis elegans Hypothetical
protein F52D2.8b protein.
Length = 309
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 469 FGLRYLFEELMWQERWQTAVFYFHSRSCRLSELLTTFLHHQYYFCN-VLNF 320
FG FE +++ ++W+ A + S S+LL H Q ++ N +L+F
Sbjct: 182 FGSLDQFERIIYLDQWRNAKTFKFENSYFCSKLLVHLFHFQCFYINEMLDF 232
>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK856.13 protein.
Length = 1037
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 319 KSLKRCKNNIDDEETSLAVLKDDSYANENKTQLSANVLATSTPQKDNVDQSFLERG 486
K + +NN+ DE + DD ++ +L +V ST Q SF G
Sbjct: 114 KQKRSARNNVVDEVEEIDTADDDEEEDDEDVELMEDVEEVSTSQHAGSSYSFQSAG 169
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 201 IKGDCRSGC*SCESSIR*SLLHCKCCQRFR-STVALFFND 317
I GDC+ GC +C + KC + + ++ AL FND
Sbjct: 343 ISGDCQRGCATCWDGVACQTRQEKCATKTQCASNALSFND 382
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 201 IKGDCRSGC*SCESSIR*SLLHCKCCQRFR-STVALFFND 317
I GDC+ GC +C + KC + + ++ AL FND
Sbjct: 343 ISGDCQRGCATCWDGVACQTRQEKCATKTQCASNALSFND 382
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = +1
Query: 166 KMTNKEDGDRGKSKATAVAAVNLVSQVLDEAYCIANAAKDSGQPWLYFSMIKSLKRCKNN 345
K+T +GDR +S + +Q+ + + +D G +++ + LK C
Sbjct: 409 KITACLEGDRVRSLECLAEIIPKFTQLFEPMTSLCALKRDDGSDESFYAELHLLKECCKV 468
Query: 346 IDDEETSLAVLKD 384
+D E +L+ + +
Sbjct: 469 TEDNEKALSKISN 481
>Z79759-7|CAE18047.1| 239|Caenorhabditis elegans Hypothetical
protein ZK858.8 protein.
Length = 239
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 141 SKLENQQFNN*MNLERRELREVKRDIMLRNE 49
++ +QQ +N MN+ RR ++RD+M R+E
Sbjct: 59 NRRNHQQRHNNMNMPRRGNLNIQRDVMSRDE 89
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +1
Query: 490 EFNTGRNEFSNSTSRLINNFFEMSQIDCNICRDDAIFDGTERIQPAEVSEIISKIDALDI 669
+F++GR +++ R+INN + ++ N D A +GT + +++KI+ L++
Sbjct: 1626 DFSSGRPGAASAGGRVINNLDGTTTVNMNGGFDIANLEGT-------LQSLLNKIEKLEM 1678
Query: 670 QLNE 681
+ NE
Sbjct: 1679 ERNE 1682
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +1
Query: 490 EFNTGRNEFSNSTSRLINNFFEMSQIDCNICRDDAIFDGTERIQPAEVSEIISKIDALDI 669
+F++GR +++ R+INN + ++ N D A +GT + +++KI+ L++
Sbjct: 1699 DFSSGRPGAASAGGRVINNLDGTTTVNMNGGFDIANLEGT-------LQSLLNKIEKLEM 1751
Query: 670 QLNE 681
+ NE
Sbjct: 1752 ERNE 1755
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +1
Query: 490 EFNTGRNEFSNSTSRLINNFFEMSQIDCNICRDDAIFDGTERIQPAEVSEIISKIDALDI 669
+F++GR +++ R+INN + ++ N D A +GT + +++KI+ L++
Sbjct: 1699 DFSSGRPGAASAGGRVINNLDGTTTVNMNGGFDIANLEGT-------LQSLLNKIEKLEM 1751
Query: 670 QLNE 681
+ NE
Sbjct: 1752 ERNE 1755
>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
protein Y48G1C.5 protein.
Length = 1161
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 VNLVSQVLDEAYCIANAAKDSGQPWLYFSMIKSLKRCKNNIDDE-ETSLAVLK 381
+ ++ ++DEA IA AK + F+ ++ L + +NID E E S ++LK
Sbjct: 370 IQSLNVLVDEAKVIAQCAKSTLTTAPDFTNLEELSKIASNIDTELEQSKSILK 422
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,359
Number of Sequences: 27780
Number of extensions: 276389
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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