Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j23
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 30 0.25
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.58
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 1.3
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 27 1.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 2.3
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 2.3
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 2.3
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 2.3
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 3.1
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 3.1
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 4.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.1
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch... 25 5.4
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 5.4
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 25 7.2
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 7.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.5
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 9.5
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 9.5
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 25 9.5
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 25 9.5
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 29.9 bits (64), Expect = 0.25
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 261 GDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFA--ETWNKSPKSPGENSSHSKRLAVK 434
G+RP D+FEE D+ + +V RR F E + + GE + SKR +
Sbjct: 151 GNRPLSDIDSFEEPGFGLDEGEELNDEVVRRMHFGGFEDSDAENEKEGEGAHKSKREVMS 210
Query: 435 KVIS 446
++I+
Sbjct: 211 EIIA 214
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 28.7 bits (61), Expect = 0.58
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +3
Query: 36 IKN*KKKPEMLCPEGSQPENDTLS--KSNDICQKKPNKVPAEGTDSLEL--TSYKNPKTW 203
+K K+ PE LC E EN+ + K +++ ++K + P ++E TS + +
Sbjct: 483 VKAPKETPERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRVYEMP 542
Query: 204 KKSISNFFRNQLRSTKSNEG 263
K +I + F+ + ST+ ++G
Sbjct: 543 KDTIPSRFKTSI-STEVHDG 561
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +3
Query: 171 ELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSL 335
++++ P S+++FF + ST S + S+DN ++ + +W L
Sbjct: 521 QISTSSTPAHDNLSLNDFFEPREASTPSESSNSSIESEDNLDKAVLNKQSQWHDL 575
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 216 SNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQS 359
S FFR +S N + P + D E K PD+++ L + ++ +S
Sbjct: 34 STFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 237 LRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFA 365
L K N R S S D+F ++ QSLG+ RQSF+
Sbjct: 92 LEVNKKNNFYRRSSSTDDFGISHARSRKEIQSLGRPHTRQSFS 134
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 150 AEGTDSLELTSYKNPKTWKKSISNFF-RNQLRSTKSNEGDRPSGSKDNFEEKEITPDQ 320
AE +++L ++S K KK N +NQ+ +S E + P G K+ E+ D+
Sbjct: 42 AEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTELDDDE 99
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 128 LADIIAFG*RIIFRLRAFWAQHFRFFFSVLNFFTI 24
L +++ FG I+F+ FW F +VL FFT+
Sbjct: 201 LKNMVIFG--ILFQGLGFWVYLLLFAVNVLRFFTV 233
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +3
Query: 12 LDLLNCEKIKN*KKKPEMLCPEGSQPENDTLSKSNDICQKKPNKVPAEGTD 164
+D++N ++N KK +L EG+ P ++ S + + PN +PA+G D
Sbjct: 568 MDIINGVTLENMKKA--LL--EGNLPISEVHKSSKQMEKAFPNGIPAQGID 614
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +3
Query: 195 KTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETW 374
K W +F NQL K++ D S S ++F P+ ++ L KV ++ + + +
Sbjct: 224 KEWTNREEKYFENQLHLVKASSSD-VSNSSNSF------PENRYPKLTKVEKQMTKSVSK 276
Query: 375 NKSPKSPGENSSHSKRLAVK 434
+N +K L +
Sbjct: 277 TSQTDKDEDNLDFTKNLLTR 296
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 3.1
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +3
Query: 195 KTWKKSISNFFRNQL--RS--TKSNEGDRPSGSKDNFEEKEITPDQKWQSLGK-VFRRQS 359
K + ++S FF + RS N D P K+ + + Q QS + +F+ S
Sbjct: 24 KLHRSTVSKFFEHPTSKRSIGVTENGNDSPEAFKNELDNRNNADSQSLQSSTESLFKADS 83
Query: 360 ---FAETWNKSPKSPGENSSHS 416
+ +K P+SP NS H+
Sbjct: 84 EDYLCKKVSKGPESPRVNSFHN 105
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 156 LQQELCLVSFGRYHCFWITYHF 91
L + V+ GRY C W++ HF
Sbjct: 250 LSVSMLKVAPGRYECLWLSCHF 271
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 342 VFRRQSFAETWNKSPKSPGENSSHSKRLAVK 434
+F SF+ + ++P SPG N S+ AVK
Sbjct: 143 LFPGSSFSASSQQNPSSPGSNDIKSEFAAVK 173
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 265 IGLQAVKIILRKKRSLLTKSGNLW 336
+ + K+ILR +S++TK ++W
Sbjct: 1969 VNTEKTKLILRPDKSIITKENHVW 1992
>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 231 NQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAET 371
NQ+ +N G++PSGS K TP+ RR F ET
Sbjct: 8 NQVAGVANNGGEQPSGSNILRLPKLYTPNPLLTKEEVEVRRNEFWET 54
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 282 KDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPK 389
K+NF+ EI D W + ++ + F N PK
Sbjct: 355 KENFKNFEIPVDTFWSDIDYMYEYRDFTVESNAFPK 390
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 129 FGRYHCFWITY 97
FG Y CFW++Y
Sbjct: 155 FGSYGCFWLSY 165
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 309 TPDQKWQSLGKVFRRQSFAETWNKSPKSPGEN-SSHSKRLAVKKVISSYFGKSQKVTSAD 485
T ++ W ++ + S A TWN K+ G++ S +V+ V S G + S+
Sbjct: 406 TREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPTSDGTSVRSVCVSCCGNFGLIGSSK 465
Query: 486 G 488
G
Sbjct: 466 G 466
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 81 SQPENDTLSKSNDICQKKPNKVPAEG 158
SQ E ++ N IC KPN V A+G
Sbjct: 588 SQQEEYIINLVNRICMLKPNLVFAQG 613
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 237 LRSTKSNEGDRPSGSKDNFEEKEITPDQ 320
++ST SN ++ G+ D FEE++I D+
Sbjct: 335 IQSTCSNIEEKHLGTCDTFEERQIGGDR 362
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 105 SKSNDICQKKPNKVPAEGTDSLELTSYKNPK 197
SKS D +K+P VP +GT + ++K K
Sbjct: 81 SKSKDSSKKEPVVVPKKGTPKIFQENHKVKK 111
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 170 QAVCSFSRNFVWFLLADII 114
Q++C F + W L ADII
Sbjct: 134 QSLCIFEKKAAWVLYADII 152
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 74 WAQHFRFFFSVLNFFTI 24
W+QH FF++ LN T+
Sbjct: 123 WSQHTSFFYAFLNIRTL 139
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 3 QIILDLLNCEKIKN*KKKPEMLCPEGSQPENDTLSKSNDICQKKPNKVPAE 155
+I L L + EK+ N K+ ++ +G+ + ++K + KPN+VP+E
Sbjct: 235 EIALALSSVEKV-NKKRTRVVVITQGA--DATIVAKDGKVTTYKPNRVPSE 282
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 105 SKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRP 272
S S+ + Q K K G+D +L K+ +SI NQ+ ST + P
Sbjct: 284 SFSSMLAQVKKEKAENNGSDGYDLQPTKSQLELYQSILRKRANQVSSTSLTKSSSP 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,923
Number of Sequences: 5004
Number of extensions: 48678
Number of successful extensions: 156
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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