Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j22
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice... 32 0.50
AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 32 0.50
AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice... 32 0.50
AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 32 0.50
AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated... 32 0.50
AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 32 0.50
AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated... 32 0.50
AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 32 0.50
AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated... 31 0.87
Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical p... 28 8.1
Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical p... 28 8.1
Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical p... 28 8.1
Z35719-5|CAE45044.1| 296|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 8.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 8.1
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 28 8.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.1
AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice
variant 1b-7b protein.
Length = 527
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 34 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 90
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 91 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 117
>AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice
variant 1b-7a protein.
Length = 523
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 34 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 90
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 91 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 117
>AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice
variant 1a-7b protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 71 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 127
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 128 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 154
>AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice
variant 1a-7a protein.
Length = 560
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 71 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 127
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 128 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 154
>AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated
protein 62, isoform b protein.
Length = 527
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 34 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 90
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 91 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 117
>AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated
protein 62, isoform e protein.
Length = 523
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 34 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 90
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 91 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 117
>AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated
protein 62, isoform a protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 71 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 127
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 128 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 154
>AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated
protein 62, isoform f protein.
Length = 560
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 337 LSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANS 516
L +G A T +P + H M + S ++H L L+ + F EL + + S
Sbjct: 71 LYTNMGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTS 127
Query: 517 NSDGTFSGSNCNTATRPVDLNEKNEHLE 600
DG+ S C++A+ DLNE H +
Sbjct: 128 R-DGSTSSDVCSSASFKDDLNEFVRHTQ 154
>AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated
protein 62, isoform g protein.
Length = 490
Score = 31.1 bits (67), Expect = 0.87
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 349 VGRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANSNSDG 528
+G A T +P + H M + S ++H L L+ + F EL + + S DG
Sbjct: 1 MGGAPT-STPMMHHEMGEAMKRDKESIYAHPL--YPLLVLLFEKCELATSTPRDTSR-DG 56
Query: 529 TFSGSNCNTATRPVDLNEKNEHLE 600
+ S C++A+ DLNE H +
Sbjct: 57 STSSDVCSSASFKDDLNEFVRHTQ 80
>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
protein C01G10.1 protein.
Length = 1204
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 442 LDNISLMSMNFSHYE-LMRNLSQANSNSDGTFSGSNCNT 555
LD IS MS+NF++YE +++N S S FS ++ T
Sbjct: 373 LDVISKMSLNFANYESIIQNASNKLSECFSNFSVTSLET 411
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 445 DNISLMSMNFSHYEL-MRNLSQANSNSDGTFSGSNCNTATRPVDLNEKNEHLERYFRSAE 621
DNI+L+ ++ + + L +S S + N V L+ + + ERYFR +
Sbjct: 432 DNIALLRVDIRDNPIALAGLLALHSAMKMNTSITLLNIDASCVKLSSEKDEFERYFREIQ 491
Query: 622 IWSDRN 639
+ DRN
Sbjct: 492 TYCDRN 497
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 445 DNISLMSMNFSHYEL-MRNLSQANSNSDGTFSGSNCNTATRPVDLNEKNEHLERYFRSAE 621
DNI+L+ ++ + + L +S S + N V L+ + + ERYFR +
Sbjct: 432 DNIALLRVDIRDNPIALAGLLALHSAMKMNTSITLLNIDASCVKLSSEKDEFERYFREIQ 491
Query: 622 IWSDRN 639
+ DRN
Sbjct: 492 TYCDRN 497
>Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 411 LESRFHIQPRIRQYIFNVNELLAL 482
+ S FH+ P+I Q+I N E LA+
Sbjct: 279 MNSHFHVDPKILQFISNTVEHLAI 302
>Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 411 LESRFHIQPRIRQYIFNVNELLAL 482
+ S FH+ P+I Q+I N E LA+
Sbjct: 279 MNSHFHVDPKILQFISNTVEHLAI 302
>Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical
protein B0564.6b protein.
Length = 423
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 411 LESRFHIQPRIRQYIFNVNELLAL 482
+ S FH+ P+I Q+I N E LA+
Sbjct: 177 MNSHFHVDPKILQFISNTVEHLAI 200
>Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.6a protein.
Length = 525
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 411 LESRFHIQPRIRQYIFNVNELLAL 482
+ S FH+ P+I Q+I N E LA+
Sbjct: 279 MNSHFHVDPKILQFISNTVEHLAI 302
>Z35719-5|CAE45044.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.7 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = -2
Query: 740 IKF*NLHNRSSRLFICGHGNYFFASKKNNPLDPQFRSLHISALRKYLSKCSFFSFRSTGR 561
+ F NL S F C N K+NP + LHIS R+ + + +F +TG+
Sbjct: 23 LDFSNLKTNSDCPFFCSSTNKMPCQTKSNPTE-----LHISTGREIVQR-NFVFRNTTGK 76
Query: 560 VAVLQLLPLNVPSELEFACDKFR 492
+L+L N + F + FR
Sbjct: 77 DFLLKLYATN--EAVTFLTEVFR 97
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 719 NRSSRLFICGHGNYFFASKKNNPLDPQFRSLHISALRKYLSKCS 588
N +S + +Y F + P+ P + +A+R Y+S+C+
Sbjct: 1339 NMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCA 1382
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 719 NRSSRLFICGHGNYFFASKKNNPLDPQFRSLHISALRKYLSKCS 588
N +S + +Y F + P+ P + +A+R Y+S+C+
Sbjct: 1596 NMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCA 1639
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 719 NRSSRLFICGHGNYFFASKKNNPLDPQFRSLHISALRKYLSKCS 588
N +S + +Y F + P+ P + +A+R Y+S+C+
Sbjct: 1595 NMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCA 1638
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 719 NRSSRLFICGHGNYFFASKKNNPLDPQFRSLHISALRKYLSKCS 588
N +S + +Y F + P+ P + +A+R Y+S+C+
Sbjct: 150 NMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCA 193
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 151 LYEIDMENQTLNNEKRF-INKARSHNTGPSQFVRNEPVKRKSVLLNET 291
LY+ + + N E+ F +NK + + PS+ E V++K V + ET
Sbjct: 4548 LYQGNQSRELDNTERNFTVNKEKDESKKPSEVQPAEIVEQKDVPVQET 4595
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 151 LYEIDMENQTLNNEKRF-INKARSHNTGPSQFVRNEPVKRKSVLLNET 291
LY+ + + N E+ F +NK + + PS+ E V++K V + ET
Sbjct: 4548 LYQGNQSRELDNTERNFTVNKEKDESKKPSEVQPAEIVEQKDVPVQET 4595
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 151 LYEIDMENQTLNNEKRF-INKARSHNTGPSQFVRNEPVKRKSVLLNET 291
LY+ + + N E+ F +NK + + PS+ E V++K V + ET
Sbjct: 4548 LYQGNQSRELDNTERNFTVNKEKDESKKPSEVQPAEIVEQKDVPVQET 4595
>AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical
protein ZK697.3 protein.
Length = 307
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 735 ILKFT*SFISTFHLWTRK-LFFCVEKE*STRSAVPIAPYFRTTEISLQVFVFFV 577
++KF I TF W +K LFF + K +R Y + I+L + VF++
Sbjct: 196 MMKFLPILIITF-FWLKKILFFLLSKGLKSREKATQVEYVQMVHIALYILVFWL 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,788,707
Number of Sequences: 27780
Number of extensions: 349309
Number of successful extensions: 949
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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