Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j19
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   2.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    23   5.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   5.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    23   6.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   6.7  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   8.8  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    23   8.8  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 180 KSLHXHIQLLHSNYVTQW 233
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 25  VFXTLQVYKLKK*KMGYCPPVCSPPDCRPIXGPASP 132
           +F T++++ L + K    PP  S   CR + G   P
Sbjct: 420 IFQTVKLWYLNESKFDTNPPPRSTMSCRKLSGIDDP 455


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 192  DARIYRIAPSCXWXXALA 139
            D  IYR+APS  W  ++A
Sbjct: 1053 DDMIYRLAPSGEWGVSIA 1070


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 208  NSCICXCKDLQDSTVVXVARCSGKXAEXQVXRSDDNPE--VNRLVDNN 71
            N C   C D  ++ +   +  +G  +   +  SDDN E    +LVD++
Sbjct: 1045 NLCAYVCMDTTETPIFHDSGKNGILSLHSIGTSDDNDEQVSGKLVDDS 1092


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +2

Query: 41  KSIN*KSKKWVIVHQSVHLRIVVRSXDLXLRSFARAXXHXHDGAI 175
           ++++ + ++ + +  S+H R+V R  +   +  A    H HD A+
Sbjct: 342 EAVHAEKRRLLDIRGSIHDRLVCRYENRYNKLHASEYNHHHDWAV 386


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 109 DDNPEVNRLVDNNPFFTFLI 50
           D N  +NR+VD  P  ++L+
Sbjct: 398 DQNQLINRIVDKLPDLSYLV 417


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 74  IVHQS-VHLRIVVRSXDLXLRSFARAXXHXHDGAIL*ILASTYTAVTLK 217
           I+H S VH+  +  S D+  + ++ +  H H   +    AST      K
Sbjct: 63  IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,170
Number of Sequences: 5004
Number of extensions: 10882
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)