Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j19
         (261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   1.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   3.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   7.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          19   7.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -3

Query: 214 ECNSCICXCKDLQDSTVVXVARCSGKXAEXQVXRSDDNP 98
           EC    C    ++   VV   +C+ K  E +  +  D P
Sbjct: 241 ECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKP 279


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 73  YCPPVCSPPDCRPIXGPASPL 135
           +C P C P    P     SPL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPL 63


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 106 DNPEVNRLVDN 74
           D+ +VNRLV+N
Sbjct: 92  DSEQVNRLVNN 102


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 154 PPTRRCYPVNP 186
           PPTR+  P++P
Sbjct: 96  PPTRKLPPLHP 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,399
Number of Sequences: 438
Number of extensions: 854
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)