Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j18
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 30 0.38
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.67
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 28 1.2
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 1.5
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 2.0
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 2.7
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.6
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 4.7
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 4.7
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 6.2
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 6.2
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 25 8.2
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 29.9 bits (64), Expect = 0.38
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Frame = -3
Query: 362 PPIFGSNFRFSNL-----FG*CAIIENSLRTFAAEYSALE-DFRVQ----QISFAADETF 213
P +F S R N G C II ++ +F A + L D + Q Q+
Sbjct: 400 PSLFESCIRVQNAPSLIKCGVCLIISSTTPSFCASVNLLNADDKSQESLMQLFTTMAHIL 459
Query: 212 VASVVEAVSFPNHNIFVTM*RFVAVIAYFTSHFERS 105
V + E ++FP N ++T+ RF VI++FT + S
Sbjct: 460 VVTTRERINFPELNEWITLHRF--VISFFTVFIQMS 493
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.1 bits (62), Expect = 0.67
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 423 NEIDSKTQAIRDPIVVTYKKGEKNNRPIRKVCIDTGITTVVTQELLDHFNNVQSSKERND 602
+EID A DP++ Y E+ N R+ + GI TV+ L + +SK +D
Sbjct: 391 SEIDISLTAYNDPVISPYYDTEEWNLEQRE---EPGIETVLDFSKLRINDKTMTSKRFDD 447
Query: 603 MSCQKIYSNDSND 641
+S + +++ D
Sbjct: 448 LSATRKTGDNTKD 460
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 706 LAISVDAPSSAILISLHTVLLLSFES 629
L IS+ P+S +LIS+H +LL S S
Sbjct: 506 LQISLSNPTSTVLISMHNLLLASILS 531
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 576 HC*SGLTAPELPLSLYPCRCKLFLWVDYS 490
HC S L +P+ L + C C LW +YS
Sbjct: 625 HCLSHLNSPDSLLRQWACLCISQLWENYS 653
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 253 SAFSRSVSLQTKHLWHLLWKLYPSQTTISSLR 158
S FS+SV+ + K H +W+L T +S ++
Sbjct: 556 SGFSKSVATRMKKYGHKVWRLKQHDTPLSQIQ 587
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 298 ILFEHLPQNIAPLKISAFSRSVSLQTKHLWHLLWKLYPSQTTISSLRCRD-SWQ 140
+L LP + L+ + + S L + WHL W + S T+++ ++ SW+
Sbjct: 639 LLAIQLPDLVQKLRTAFANESKELTRRTGWHLKWDVRKSTVTVTTSDNKEMSWK 692
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 271 YSAANVRREFSMIAHQPNKLENLKLEPNIGGRGERNEARIRRNLIIVDRVITKLTARRKP 450
Y AA +R F++ + P KL+ L+ + R ERN + R+ L+ TKL KP
Sbjct: 57 YPAA-LRYIFALNSRHPEKLQKLRKMKAMQERQERNWSLERQRLVQHFESKTKLQEILKP 115
Query: 451 FA 456
+
Sbjct: 116 LS 117
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 359 PIFGSNFR-FSNLFG*CAIIENSLRTFAAEYSALEDFRVQQISFAADE 219
PI N + SN CA E+ L+ +E + LED + +SF DE
Sbjct: 303 PIIEENMQELSNSDDICAEKESRLKLVLSEKAKLEDSKNSVLSFLKDE 350
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 132 CDHCHESLHRNEDIVVWEGYSFHNRCHKCFVCSE 233
C C SL I+ G H +C KC CS+
Sbjct: 258 CHSCGGSLRAGR-IISASGKKLHPQCFKCDTCSQ 290
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 558 LDHFNNVQSSKERNDMSCQKIYSNDSN 638
LD F N Q + +D KIY N SN
Sbjct: 21 LDDFQNKQGIESSDDAFLSKIYENVSN 47
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -2
Query: 702 LFPWTLLVQLFSYRCIRFCCCRLNRLNKSSDRTYRSVLSKTV 577
L+PW LV F + CC +K+ +R ++ + +V
Sbjct: 242 LYPWIALVSAFVAETMTLCCIVTIFYDKNVNRQWKQYILTSV 283
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +2
Query: 470 DIQKRRKE*STHKKSLHRHGYNDSGNSGAVRPLQQCTVFERTERYVLSEDLFKRFKRQQQ 649
++Q+ KE S N S +S ++C+ +++ Y L D+F+ R
Sbjct: 106 EVQQTEKEKDVDSASAENESINSSSSSS-----KECSTQTQSKHYNLHRDIFQMRIRYHA 160
Query: 650 NR 655
NR
Sbjct: 161 NR 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,843
Number of Sequences: 5004
Number of extensions: 50995
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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