Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j18
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 38 0.006
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 31 1.2
08_02_1449 - 27174451-27178005 30 2.1
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 29 3.7
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678... 29 3.7
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 28 6.5
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858... 28 8.6
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 108 SFKMACEVCDHCHESLHRNEDIVVWEGYSFHNRCHKCFVCSET-DLLNAEIFKGAIFCGK 284
SF + C C +++H D++ +G S+H C KC C T + N G ++C
Sbjct: 2 SFTGTQDKCKACDKTVHFI-DLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKT 60
Query: 285 CSKRIFNDCAS 317
+++F + S
Sbjct: 61 HFEQLFKETGS 71
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 132 CDHCHESLHRNEDIVVWEGYSFHNRCHKCFVCSET-DLLNAEIFKGAIFCGKCSKRIFND 308
C C ++++ + + +G FH C KC C T L N +G +C +++F +
Sbjct: 9 CKVCTKTVYPMDQLST-DGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFEQLFKE 67
Query: 309 CAS 317
S
Sbjct: 68 TGS 70
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 126 EVCDHCHESLHRNEDIVVWEGYSFHNRCHKCF--VCSETDLLNAEIFKGAIFCGKCSKRI 299
E C C ++ + E + V EG ++H C KC C+ + N +G ++C ++
Sbjct: 106 EKCATCSKTAYPLEKVTV-EGQAYHKSCFKCSHGGCAISP-SNYAALEGILYCKHHFSQL 163
Query: 300 FNDCAS 317
F + S
Sbjct: 164 FKEKGS 169
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 699 FPWTLLVQLFSYRCIRFCCCRLNRLNKSSDRTYRSVLSKTV--HC*SGLTAPELPLSLYP 526
+P L L S RC+RF C+ + S + + S L K C + L P+LP SL
Sbjct: 1013 WPVKELCGLNSLRCVRFSYCKNLTSSSSEESLFPSGLEKLYIEFCNNLLEIPKLPASLET 1072
Query: 525 CR 520
R
Sbjct: 1073 LR 1074
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 120 ACEVCDHCHESLHRNEDIVVWEGYSF 197
A VCDHCH HR++ ++ GYS+
Sbjct: 348 AATVCDHCH---HRHQQQLLAVGYSY 370
>09_06_0177 + 21365314-21366100,21367451-21367578,21367715-21367870,
21368006-21368196,21369392-21369434,21369537-21369627,
21369859-21369935,21370278-21370366,21370474-21370657,
21370885-21371138,21371465-21371567,21371646-21371977,
21372060-21372504
Length = 959
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 402 NYSGPGYNEIDSKTQAIR-----DPIVVTYKKGEKNNRPIRKVCIDTGITTVVTQELLDH 566
N S ++ S+ Q I+ +P+ +T +GE + P +C TGI +VV + +
Sbjct: 834 NRSNISWDAFSSQVQTIQKGFIGEPMEITPGRGEFHANPAACICEKTGIKSVVGSDSRSN 893
Query: 567 FNNVQSSKERN 599
V S++ N
Sbjct: 894 RETVNSTEISN 904
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = +3
Query: 465 VVTYKKGEKNNRPIRKVCIDTGITTVVTQELLDHFNNVQSSKERNDMSCQKIYSNDSNDS 644
++ Y +G+ NR R V TG VV+ + + + +DM+ + +D
Sbjct: 407 ILPYPRGKPGNRSNRAV---TGSKVVVSGNMAESLETLDVPLAHSDMNGSSTVQGEPSDE 463
Query: 645 NRTVCSDM 668
N + D+
Sbjct: 464 NELIVDDL 471
>03_06_0474 -
34184002-34184660,34184755-34184887,34185071-34185886,
34186013-34186104,34186710-34186863
Length = 617
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 570 NNVQSSKERNDMSCQKIYSNDSNDSNRTVC--SDMRIAELGAS 692
N + S+ RN+ S ++ +S+ ++S + VC S IA+L AS
Sbjct: 282 NKLYCSEPRNEESTEQSWSSTDSESEKAVCFSSSGSIADLHAS 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,981,727
Number of Sequences: 37544
Number of extensions: 293284
Number of successful extensions: 895
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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