Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j17
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    42   7e-05
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    38   0.002
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    28   1.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   2.8  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    26   6.4  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   8.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.5  

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 504 PVILYCHGNSNHRASPHRLKIYSVFQE-LNFHVVTFDYRGYGDSTKVKPTERGVVEDLFH 680
           P +LY H N+ +    HRL I  VF   LN +V    YRGYG ST   P+E G+  D   
Sbjct: 90  PTLLYFHANAGNMG--HRLPIARVFYSALNMNVFIISYRGYGKSTG-SPSEAGLKIDSQT 146

Query: 681 VYSWLLK 701
              +L++
Sbjct: 147 ALEYLME 153


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 450 VADLKTNNTFHELKNSRNPVILYCHGNSNH-RASPHRLKIYSVFQELNFHVVTFDYRGYG 626
           +ADL T + + ++K+     +++ HG   H  A P   + +    E N  V TFD RG+G
Sbjct: 1   MADLYTKD-WTDVKDKPVARVVFIHGFGEHVNAYP---EFFEALNERNIEVYTFDQRGFG 56

Query: 627 DSTKVKPTERG 659
            S K  P ++G
Sbjct: 57  HSRKGGPKKQG 67


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 406 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 305
           LM   + ++++ M   +P +TL +DGLS F  LG
Sbjct: 98  LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 303  FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 434
            F  N++    S CS+    NL+ + R ++ N+  R+G  HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 432 NSEIKDVADLKTNNTFHELKNSRNPVILYCHGNSNHRAS 548
           N +  ++ DLK   T  E+K S   + L  H + NH  S
Sbjct: 111 NHQYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPS 149


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 258 REYHFPLDRFIVSEHQGQHGN 196
           R Y +P D F+VS  + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 432 NSEIKDVADLKTNNTFHELKNSRN-PVILYCHGNSNHR 542
           N +I DV DL    T   L N  N PV+L+C     HR
Sbjct: 136 NPDISDVDDL-VRKTLQLLLNKENWPVLLHC-SRGKHR 171


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 307 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 396
           R + TTI R  A++   H G+TSTLS  RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,284
Number of Sequences: 5004
Number of extensions: 51231
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)