Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j14
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 31 0.16
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 31 0.22
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.29
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 28 1.5
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.7
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 2.7
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 2.7
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.7
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 3.5
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 6.2
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 6.2
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 6.2
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 8.2
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 8.2
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.2
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 661 SPHAFTLPSSSFLG*RTVNFVLSVSFCERLDSIVWQATSRRCPDDSEEFSSSFC 500
+P++F + SS G VNF +++ E+ + ++ A C DD F S C
Sbjct: 328 NPYSFPITSSVHPG-EDVNFTVALKVPEKSNKEIFTAFFNICSDDGSVFHKSLC 380
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 339 KSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKKGDMAEFLKRKELRQMKPV----DLQN 506
K P +K++ ++ + + N KK+ + +++K + E L+ + + KP+ D+
Sbjct: 873 KVLPVSKTSDLTDKVNRRQRKNDKKIKNKIQVKLSSILEMLRSRYKKFKKPIIDLNDIYI 932
Query: 507 DDENSSESSGHLRD 548
D+ N G +D
Sbjct: 933 DESNERVVKGKSKD 946
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 30.3 bits (65), Expect = 0.29
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = +3
Query: 129 KKKFSCSLTINMYTLKGIFPEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQDMTN 308
KKK S ++ L+ I + KK+ KK + + K+ K ++ K ++ +D
Sbjct: 178 KKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPE 237
Query: 309 SATGSTIGQVKSSPSNKSAKISLNIGKPG-AANRKKLSDNVRIKK 440
S S++ +VK N+ A I + + A R +SD V +++
Sbjct: 238 ST--SSVEKVKE--GNRPASIHFHTRRKFLAQKRAAVSDPVALRE 278
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = +3
Query: 261 SPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKK 440
+P+ S L TN+ G + ++S SNK A L + AA+ +L ++ +
Sbjct: 318 TPEAVSNKLVFLQNTNANLGERVSSLESQLSNKPANQPLGANEKDAAHITELETKLK-EL 376
Query: 441 GDMAEFLKRKELRQMKPVDLQNDDENS 521
+ L+R++ + +DL ++ S
Sbjct: 377 HEQNRRLQRQKSLATQEIDLLRENLKS 403
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 481 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 320
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 253 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 304
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 481 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 320
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 253 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 304
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 481 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 320
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 225 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 276
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 481 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 320
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 253 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 304
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 315 TGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDN 425
T ST Q SSP +KSA +S + K N K+ SD+
Sbjct: 203 TQSTHEQTLSSPISKSASVSKSENK-ALVNNKRYSDS 238
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 6.2
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = +3
Query: 273 TSKSLRTQDMTNSATGSTIGQ-VKSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKKGDM 449
TS L+ QD ++S S+ + SS S S + S + +KK + D
Sbjct: 26 TSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDS 85
Query: 450 AEFLKRKELRQMKPVDLQNDDENSSESSGHLRDVACQTIESNLSQKLTESTKLTVLYPKK 629
+ +E + ++ ++ E+ SES + + ES+ S++ S+ L P+K
Sbjct: 86 ESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSFLK--KPEK 143
Query: 630 ED 635
E+
Sbjct: 144 EE 145
>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/98 (20%), Positives = 39/98 (39%)
Frame = +3
Query: 303 TNSATGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKKGDMAEFLKRKELRQ 482
TN A + +K + KIS + K KK+ +N +MAE K+ +
Sbjct: 15 TNPANTTIRQYIKETLEEAPEKISQTVKKATGKASKKIDENKDKSPQEMAENAKQSVKQT 74
Query: 483 MKPVDLQNDDENSSESSGHLRDVACQTIESNLSQKLTE 596
K + + + ++ +++ Q E+ L + E
Sbjct: 75 AKDAKDTDYQQKAKDAGKKIKEEFSQRSENVLEETRRE 112
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 309 SATGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKKGDMAEFLKRKELRQMK 488
S G+ + ++ S P + I + G A + + R K G A+ KRK+ + +K
Sbjct: 452 SKDGTNLKEINSVPEFSDENV---INQTGPAKKTPVQ---RRKDGKFAKSTKRKKQKSLK 505
Query: 489 PVDLQNDDEN 518
P D +N + +
Sbjct: 506 P-DTENQESS 514
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +3
Query: 159 NMYTLKGIFPEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQ--DMTNSATGSTIG 332
N L P +D++ + I +++++ +++S +E + L+ + + N S
Sbjct: 72 NEVALFATAPYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQFA 131
Query: 333 QVKSSPSNKSAKISLNIGKPGAANRKKLSDNVR 431
+K S + + NI +PG RKK + R
Sbjct: 132 DLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPR 164
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 504 NDDENSSESSGHLRDVACQTIESNLSQKLTESTKLTVLYP 623
NDD+N S+ S + C N Q+L+E +L + YP
Sbjct: 97 NDDDNDSQDSSWINVRVC----VNCRQQLSELKELDLPYP 132
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 531 SGHLRDVACQTIESNLSQKLTESTKLT 611
+GHL DV C T N + LT S+ T
Sbjct: 460 AGHLSDVDCVTFHPNSAYVLTGSSDKT 486
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +3
Query: 192 PKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAKI 371
P+K+Q+ + K K ++KQS + D + + + S+ +NK +I
Sbjct: 64 PRKNQQLASSERKTKNKKRLEKQSSAIADSIGESLDDPQTVYDEHLFDILSARTNKRGQI 123
Query: 372 SLN 380
+LN
Sbjct: 124 NLN 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,253
Number of Sequences: 5004
Number of extensions: 60477
Number of successful extensions: 235
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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