Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j12
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 125 VNCFKFIFEY-NFYRGVPNCH**KSVLNCLF 36
           ++CFKF FE  ++Y  + +CH  KSVL  +F
Sbjct: 262 IHCFKFSFEEKSWYAALADCHSEKSVLTGIF 292


>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 223 KDR-SRLPKWLQELGF*NINEKNKKTAVNVYRFMITL-SYKIILC*HRIRVSYD 378
           KDR S+   WLQEL   N +   K   + ++R M  L  YK++   H+  ++Y+
Sbjct: 654 KDRTSKDATWLQELNHINQSSPEKLVELIIHRLMRYLYMYKVV---HQFSLAYE 704


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 223 KDR-SRLPKWLQELGF*NINEKNKKTAVNVYRFMITL-SYKIILC*HRIRVSYD 378
           KDR S+   WLQEL   N +   K   + ++R M  L  YK++   H+  ++Y+
Sbjct: 654 KDRTSKDATWLQELNHINQSSPEKLVELIIHRLMRYLYMYKVV---HQFSLAYE 704


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,459,136
Number of Sequences: 27780
Number of extensions: 179054
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)