Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j12
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   0.051
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 0.051
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   KRQLTSNKKFVKTNSLIRIFTSDNLERLD 88
           K  L ++K F+K NS   +  S  L+RLD
Sbjct: 555 KISLATSKSFIKANSQTEVSNSKKLDRLD 583


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 243 RKPTAIFVWHQTINALQL 190
           RKP  I  WH  +NA  L
Sbjct: 78  RKPLPIEPWHGVLNATVL 95


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 243 RKPTAIFVWHQTINALQL 190
           RKP  I  WH  +NA  L
Sbjct: 78  RKPLPIEPWHGVLNATVL 95


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 178 YGWYKLQSVDSLVPDKDRSRLPKWLQELGF*NINEKNKKTAVNVY 312
           Y W +L     +    D+   PKWLQ L     +  N     N Y
Sbjct: 631 YEWKELIPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWY 675


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 271 NINEKNKKTAVNVYRFMITLSYKI 342
           N+NEKN+    NV+   I   Y++
Sbjct: 65  NVNEKNQIMKSNVWLRFIWTDYQL 88


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 373 YDCVTWWKIC 402
           Y C  WWKIC
Sbjct: 486 YPCC-WWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 373 YDCVTWWKIC 402
           Y C  WWKIC
Sbjct: 539 YPCC-WWKIC 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,442
Number of Sequences: 438
Number of extensions: 2197
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)