Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j09
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 85 1e-17
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 76 5e-15
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 55 1e-08
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 46 4e-06
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 30 0.24
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 29 0.55
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.7
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 27 2.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.2
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 26 3.9
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 6.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 84.6 bits (200), Expect = 1e-17
Identities = 45/144 (31%), Positives = 73/144 (50%)
Frame = +1
Query: 118 LTNAQEQDLREAFNLLDYTGEGKXXAEDFRVAIKALGYEPXNEELQTMIRAVDXGDTGKL 297
LT+ Q + REAF+L D +G + + V +++LG P ELQ MI VD G +
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 298 SFENFETAIMRKIMALDSDGDIMKSFRLFDDDDSGFINFENVKKVSQILGTYLTXXXXXX 477
F F T + RK+ D++ ++ ++F++FD D +G+I E + V LG L+
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 478 XXXXXXXXXXGLISVEEFMXMIKN 549
G+I+ EEF +I +
Sbjct: 126 MIREADTDGDGVINYEEFSRVISS 149
Score = 45.2 bits (102), Expect = 8e-06
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 133 EQDLREAFNLLDYTGEGKXXAEDFRVAIKALGYEPXNEELQTMIRAVDXGDTGKLSFENF 312
E+++REAF + D G G E+ + +LG EE+ MIR D G +++E F
Sbjct: 84 EEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143
Query: 313 ETAIMRK 333
I K
Sbjct: 144 SRVISSK 150
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 75.8 bits (178), Expect = 5e-15
Identities = 40/145 (27%), Positives = 72/145 (49%)
Frame = +1
Query: 109 KLTLTNAQEQDLREAFNLLDYTGEGKXXAEDFRVAIKALGYEPXNEELQTMIRAVDXGDT 288
++ +T Q QD+ EAF L D + + R A++ALG+ E+ ++R D
Sbjct: 28 RVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGK 87
Query: 289 GKLSFENFETAIMRKIMALDSDGDIMKSFRLFDDDDSGFINFENVKKVSQILGTYLTXXX 468
G L E+F + KI+ D +I ++F LFDDD++G I+ N+++V++ L +
Sbjct: 88 GYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQE 147
Query: 469 XXXXXXXXXXXXXGLISVEEFMXMI 543
G I+ +EF+ ++
Sbjct: 148 LEAMIEEFDLDQDGEINEQEFIAIM 172
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 54.8 bits (126), Expect = 1e-08
Identities = 33/131 (25%), Positives = 63/131 (48%)
Frame = +1
Query: 55 SSSEEDLNQSSXVNEIKAKLTLTNAQEQDLREAFNLLDYTGEGKXXAEDFRVAIKALGYE 234
+SS+ Q++ A LT++Q Q+L+EAF LLD G+G ED + + +L +
Sbjct: 21 TSSQRVAAQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQD 80
Query: 235 PXNEELQTMIRAVDXGDTGKLSFENFETAIMRKIMALDSDGDIMKSFRLFDDDDSGFINF 414
+ + M +++ ++ F TA+ + + D++++F FDD SG I
Sbjct: 81 ASEDSINHMFESINP----PINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPI 136
Query: 415 ENVKKVSQILG 447
++ +G
Sbjct: 137 STMRDALSSMG 147
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 46.0 bits (104), Expect = 4e-06
Identities = 28/110 (25%), Positives = 53/110 (48%)
Frame = +1
Query: 130 QEQDLREAFNLLDYTGEGKXXAEDFRVAIKALGYEPXNEELQTMIRAVDXGDTGKLSFEN 309
Q +++EAF L D +G +++LG + EL + + GD + +
Sbjct: 7 QTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSN--ELGDA--IDEKK 62
Query: 310 FETAIMRKIMALDSDGDIMKSFRLFDDDDSGFINFENVKKVSQILGTYLT 459
F + + K+ +S+ + +K+FR+FD D+SG+I + LG L+
Sbjct: 63 FMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLS 112
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 30.3 bits (65), Expect = 0.24
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 343 LDSDGDIMKSFRLFDDDDSGFINFENVKKVSQILGTYLT 459
L+ D + ++F LFD G+I+FE++++ LG LT
Sbjct: 8 LEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLT 46
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 29.1 bits (62), Expect = 0.55
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +1
Query: 70 DLNQSSXVNEIKAKLTLTNAQEQDLREAFNLLDYTGEGKXXAEDFRVAIKAL-GYEPXNE 246
D++ +N + ++ +E+ L+ AF + D +G + + +K + G +
Sbjct: 72 DVDFQEFINSLSV-FSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLRED 130
Query: 247 ELQTM----IRAVDXGDTGKLSFENFETAI 324
+LQ + I VD GK+SFE F+ +
Sbjct: 131 QLQQIVDKTIMEVDKDRDGKISFEEFKDIV 160
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 118 LTNAQEQDLREAFNLLDYTGEGKXXAEDFRVAIKAL--GYEPXNEELQTMIRAVDXGDTG 291
LTN + L + FN LD G+G D IKA + +E++ IR V+ +G
Sbjct: 13 LTNEEILTLTDQFNKLDVDGKGYL---DQPTTIKAFEDSKKGSYDEVREAIREVNVDSSG 69
Query: 292 KLSFENF 312
++ E+F
Sbjct: 70 RVEPEDF 76
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 250 LQTMIRAVDXGDTGKLSFENFETAIMRKIMALDSDGDIMKSFRLFDDDDSGFINFENVKK 429
L+ + D TG LS ++ + I ++ D +I F L+D + GF++ +V K
Sbjct: 581 LRHLFLRFDKSMTGSLSLQDLVSGIA-ELKFRDVMRNISFIFELYDFNGDGFMDKPDVLK 639
Query: 430 VSQIL 444
VS+ +
Sbjct: 640 VSEAI 644
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/36 (27%), Positives = 25/36 (69%)
Frame = +1
Query: 43 TIAYSSSEEDLNQSSXVNEIKAKLTLTNAQEQDLRE 150
TI + S+ D+ ++ +N++K+++T+T+ +DL +
Sbjct: 269 TIRHLESQSDIINTT-INDLKSQMTITDESSEDLEK 303
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 586 HRQNPTEFLCEHYFLSXS*ILRPISVRRNLYRHRQSFLQ 470
H NP++ L EH F++ I + ++ L+R ++ Q
Sbjct: 186 HSHNPSQLLFEHPFMALGLIFGSVVLKEWLFRKTRTVAQ 224
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 274 DXGDTGKLSFENFETAIMRKIMALDSDGDIMKSFRLF-DDDDSGFINFENVKKV 432
D +TG L+ E+ + + + + + D+ + + DDDD+ FE+V ++
Sbjct: 185 DLDETGNLAPEDLKDEV-KSVHEFNEPNDLRQQEESYSDDDDTNVNEFEDVNEI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,133
Number of Sequences: 5004
Number of extensions: 33187
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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