Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j08
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   0.87 
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.0  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.5  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    26   4.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.1  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 247 LIKYTIVLFSLCFN-IVLQLVVYINFVMNEMILLIIPFSFLRLIHIV 384
           ++ ++  L S C N  +    VY+ +++N  +L +I  +   L+HIV
Sbjct: 99  ILSFSAHLLSHCANRSIYNSTVYLEYLLNSSVLEVIDSTLALLLHIV 145


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 511 FILCYLQQYSFNY*NLSIHIKVYLVFYFLSL-TYIKNIPIFYFIYNISSILVE*XKYFIT 687
           FI     +++FN     + +  Y+ FYF+ + ++  ++ I YF  N+S  +V   +  + 
Sbjct: 19  FITLQYPRWTFNKWKALLPVSAYISFYFIIISSFSTHLNILYF--NLSKSMVSFAQ--VP 74

Query: 688 KKTYLNL 708
            + YLNL
Sbjct: 75  LEEYLNL 81


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 110 NHYIYIFRTYFLIFIYSFHYILF 178
           N ++Y FRT FLI +Y F+Y  F
Sbjct: 2   NFFLY-FRTIFLIQLYFFNYSTF 23


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 110 NHYIYIFRTYFLIFIYSFHYILF 178
           N ++Y FRT FLI +Y F+Y  F
Sbjct: 2   NFFLY-FRTIFLIQLYFFNYSTF 23


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 499 LFSFFILCYLQQYSFNY---*NLSIHIKVYLVFY 591
           LFS F+LC+    S +Y    N+ +HI V   FY
Sbjct: 101 LFSSFVLCFFGNVSGDYGYVDNVPLHISVISHFY 134


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 269  RTIVYFIKFVYEQETDTETNLSI 201
            + IV+F+KFV ++ T  E NL++
Sbjct: 1162 KLIVHFMKFVLKKITSMEVNLNV 1184


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 455 NYFFTLLYSHLFYTLCFHFLYYATFN 532
           NY F  L++  F TLC   +Y+   N
Sbjct: 140 NYKFMRLWNAAFGTLCIPLVYFTALN 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,330
Number of Sequences: 5004
Number of extensions: 39687
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)