Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j08
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521...    29   3.7  
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468...    28   6.4  
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    28   6.4  

>06_03_1117 +
           27750291-27750338,27751360-27751812,27751987-27752161,
           27752227-27752551,27752705-27752786,27752820-27752889,
           27753341-27753420,27753514-27753750
          Length = 489

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 529 QQYSFN--Y*NLSIHIKVYLVFYFLSLTYIKNIPIFYFI 639
           QQYS+N  + ++ I + V ++ YF  L  + N+P+ +F+
Sbjct: 331 QQYSYNRFWQDIPILVMVSMLAYFCFLEQLLNVPLCFFL 369


>03_05_0603 -
           26046145-26046273,26046400-26046459,26046820-26046895,
           26046988-26047109,26047286-26047360,26047466-26047536,
           26048102-26048129,26048625-26048738
          Length = 224

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 25  VFFILYLLHRVFIFIIIPYHV*LSIKIIQSLHLY 126
           + F+ +L+ R+ +FI + YH+ L    +  +H +
Sbjct: 156 LMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAF 189


>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 210 ISFCICLLFIYKFNKVHYCSI*SMLQYCITTS 305
           IS CI L FI+KF +    ++  ++ YC+TT+
Sbjct: 363 ISICIAL-FIWKFIQYRNRAVFGIMGYCVTTA 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,498,807
Number of Sequences: 37544
Number of extensions: 165921
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)