Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j08
         (714 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   3.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   5.4  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.5  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 95   PLR*FNHYIYIFRTYFLIFIYSFHYILF 178
            P+R  N Y+Y++  +F+IF   F   LF
Sbjct: 1532 PIRETNIYMYLYFVFFIIFGSFFTLNLF 1559


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 426 HCTYSMNVSTTTSSLYSIHTFS 491
           +CTYS + +TTT++  S  T S
Sbjct: 470 YCTYSSDSTTTTTTTKSASTSS 491


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 91  LSIKIIQSLHLYF*NLLSNIYLLFSLHTLH*NSHELFILKLVSVSV 228
           LSI I+ SLH++F  L+  I    SL       + +F + LVS+S+
Sbjct: 277 LSISILISLHVFF-LLVVEIIPPTSLVVPLLGKYLIFAMILVSISI 321


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 91  LSIKIIQSLHLYF*NLLSNIYLLFSLHTLH*NSHELFILKLVSVSV 228
           LSI I+ SLH++F  L+  I    SL       + +F + LVS+S+
Sbjct: 277 LSISILISLHVFF-LLVVEIIPPTSLVVPLLGKYLIFAMILVSISI 321


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,477
Number of Sequences: 2352
Number of extensions: 8157
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)