Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j08
         (714 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    34   0.44 
AK124397-1|BAC85846.1|  155|Homo sapiens protein ( Homo sapiens ...    32   2.3  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 34.3 bits (75), Expect = 0.44
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 490 LHSLFSFFILCYLQQYSFNY*NLSIHIKVYLVFYFLSLTYIKNIPIFYFIYNISSILVE* 669
           L+     F+  ++  Y F Y  + +++ +YL  YF   TYI  + IF +IY    I +  
Sbjct: 5   LYVYIYMFMYIFIFIYIFIYIYIYVYVYIYLYIYFYIFTYI-YLYIFIYIYICLYIYLYI 63

Query: 670 XKYFITK-KTYLNLFI 714
             Y  T    YL++FI
Sbjct: 64  YLYIFTYIYIYLHIFI 79



 Score = 31.1 bits (67), Expect = 4.1
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +1

Query: 25  VFFILYLLHRVFIFIIIPYHV*LSIKIIQSLHLYF*NLLSNIYLLFSLHTLH*NSHELFI 204
           ++  +Y+   +FIFI I  ++ + + +   L++YF  + + IYL   ++        L+I
Sbjct: 5   LYVYIYMFMYIFIFIYIFIYIYIYVYVYIYLYIYF-YIFTYIYLYIFIYIYICLYIYLYI 63

Query: 205 LKLVSVSVSCSYTNLIKY--TIVLFSLCFNIVLQLVVYINFVM 327
              +   +   Y ++  Y    +   +C  I + + +YIN  M
Sbjct: 64  YLYIFTYIYI-YLHIFIYLHIFIYICICLYIFIYVFIYINIYM 105



 Score = 30.3 bits (65), Expect = 7.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 487 FLHSLFSFFILCYLQQYSFNY*NLSIHIKVYLVFYFLSLTYIKNIPIFYFIY 642
           F++     +I  Y+  Y F Y  + +HI +YL   F+ +     I I+ FIY
Sbjct: 50  FIYIYICLYIYLYIYLYIFTYIYIYLHIFIYL-HIFIYICICLYIFIYVFIY 100


>AK124397-1|BAC85846.1|  155|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42406 fis, clone ASTRO3000482. ).
          Length = 155

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 440 YECFYNYFFTLLYSHLFYTLCFHFLYY 520
           Y C Y Y FT +Y HLF   C  ++YY
Sbjct: 47  YVCIYAYTFTHIYRHLFIYTC-KYVYY 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,872,647
Number of Sequences: 237096
Number of extensions: 1116575
Number of successful extensions: 9205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9201
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)