Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j08
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine rece... 32 0.35
U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine rece... 31 0.62
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF125954-1|AAK68174.1| 340|Caenorhabditis elegans Serpentine re... 30 1.9
AC006769-2|AAF60583.2| 340|Caenorhabditis elegans Hypothetical ... 30 1.9
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 29 3.3
AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormo... 29 3.3
Z81117-9|CAB03317.2| 333|Caenorhabditis elegans Hypothetical pr... 28 5.8
U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched fami... 28 7.6
>U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 2 protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Frame = +2
Query: 449 FYNYFFTLLYSHL--FYTLCFHFLYYATFN----------SIRLIIEISQYTSKFILFST 592
F +YF+ LLY+ + F C L ++ F S+R ++E TSKF L +
Sbjct: 190 FNSYFWELLYAEIGNFICNCIFLLVHSKFKARFLHQQRSLSVRYLLEEISQTSKFTLIVS 249
Query: 593 FYHLL 607
F HLL
Sbjct: 250 FTHLL 254
>U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine
receptor, class x protein77 protein.
Length = 313
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 431 YLLYECFYNYFFTLLYSHLF---YTLCFHFLYYATFNSIRLIIEISQY-TSKFILFS 589
YL +F L Y+ LF TL FHF+YY I +Y SKF+LFS
Sbjct: 109 YLSINRLVAIYFPLKYNFLFGIKLTLAFHFIYYLDRVRNVTFENIDRYKDSKFMLFS 165
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 124 YF*NLLSNIYLLFSLHTLH*NSHELFILKLVSVSVSCSY--TNLIKYTIVLFSLCFNIVL 297
+F L+ + ++F L T + F+L L+S+ C Y N KY + N+V+
Sbjct: 82 FFVFLIPVLLIVFPLVTGLMHDVNEFLLGLLSIQRFCLYFMPNYEKYLNISVE-ALNVVV 140
Query: 298 QLVVYINFVMNEMILLIIPFSF 363
+ + YI F++ ++L+I+P+ +
Sbjct: 141 RNL-YICFIIKSVMLIILPYIY 161
>AF125954-1|AAK68174.1| 340|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 60 protein.
Length = 340
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 574 VYLVFYFLSLTYIKNIPIFYFIYNISSILVE*XKYFITKKTYLN 705
VY YF S + I +I +FY I+N +S ++ +YF+ + N
Sbjct: 11 VYYPIYFTSCS-ILHILLFYLIFNKTSKVLRTMRYFLYPSNFFN 53
>AC006769-2|AAF60583.2| 340|Caenorhabditis elegans Hypothetical
protein Y45G12C.7 protein.
Length = 340
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 574 VYLVFYFLSLTYIKNIPIFYFIYNISSILVE*XKYFITKKTYLN 705
VY YF S + I +I +FY I+N +S ++ +YF+ + N
Sbjct: 11 VYYPIYFTSCS-ILHILLFYLIFNKTSKVLRTMRYFLYPSNFFN 53
>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
protein D2013.8a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 86 YDYPLR*FNHYIYIFRTYFLIFIYSFH 166
Y +PL+ F+ YI + TYF+ IY ++
Sbjct: 262 YFHPLKTFSDYIPLISTYFVCMIYVYY 288
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 512 LYYATFNSIRLIIEISQYTSKFILFSTFYHLLTSKT 619
+++ F+ +L I +Q+ SKF LF T + SKT
Sbjct: 2 IFFQNFDHTKLKIPKNQFLSKFQLFPTHFPFFDSKT 37
>AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform a protein.
Length = 412
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 512 LYYATFNSIRLIIEISQYTSKFILFSTFYHLLTSKT 619
+++ F+ +L I +Q+ SKF LF T + SKT
Sbjct: 2 IFFQNFDHTKLKIPKNQFLSKFQLFPTHFPFFDSKT 37
>Z81117-9|CAB03317.2| 333|Caenorhabditis elegans Hypothetical
protein T06E6.8 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 431 YLLYECFYNYFFTLLYSHLFYTLCFHFLYYATFNSIRLIIEISQY 565
Y+LY CF NY+ + + F F++ A+ SI II +S Y
Sbjct: 255 YILYSCFTNYYNPIANN-------FIFIFVASRGSISTIILLSAY 292
>U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched family
protein 2 protein.
Length = 936
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 190 HELFILKLVSVSVSCSY-TNLIKYTIVLFSLCFNIVLQLVVYINFVMNEMILLIIP 354
H L + + S++ + ++ TNL IVL CF + L V +N++ +++LI+P
Sbjct: 439 HSLVSMFVTSLTTASTFLTNLSSPVIVL--RCFGVYAALTVTVNYI---LVVLILP 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,023,292
Number of Sequences: 27780
Number of extensions: 209047
Number of successful extensions: 676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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