Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j07
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   4.7  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   4.7  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.7  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   8.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.2  

>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 548 DEPLIGLPSLNLNVYADKDNKFCKA--FTQSYYKTFGGKTRLVDYSDPV 688
           ++PL+ LP+ N  V     ++ CK+   TQ+Y ++  G  +L D  DP+
Sbjct: 133 NQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDL-DPI 180


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 182 ETVSVLLPSLSLEAMNINNVSYGTPQPIGRDH 87
           ETV++L  S+S+    +N+V Y T   +G DH
Sbjct: 607 ETVNILSSSISVIECAVNDVFYATVHALG-DH 637


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 18  HYSLLAFLISFYYLRCSENFTV 83
           H SL +FL+S + L CS +F+V
Sbjct: 122 HQSLDSFLLSLFDLLCSHHFSV 143


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -1

Query: 593 RRHLNSVTANRLGVRRKISSLL*EKARESLLCLSNLGT*VDDHTLSP 453
           RR+ ++ TA RL VRR  S      ++ S L  S+ G  VDD  L+P
Sbjct: 153 RRYYSTRTAQRLDVRRPASRSS-RYSKTSDLPPSDPGRFVDDSDLTP 198


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 712 IINLFSRSHRVTVVHKPGLTPEGLVVGLSERLTELVVLIS 593
           II+  +  H   + H+  L PE  ++ LSE  +ELVV IS
Sbjct: 121 IIDGVAHLHSHGIYHRD-LKPENFLLSLSEDGSELVVKIS 159


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 29   TCVFDFILLSPMLRKLYSF 85
            T V DF+ L  +LRK+Y+F
Sbjct: 1614 TTVNDFLFLQTILRKIYNF 1632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,513
Number of Sequences: 5004
Number of extensions: 58756
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)