Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j07
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533...    30   1.6  
12_02_0219 + 15822050-15824896                                         29   3.7  
09_04_0740 + 19850745-19851254                                         29   4.9  

>01_06_1089 -
           34451982-34452670,34452755-34452814,34453287-34453352,
           34454055-34454253,34454470-34454719,34454830-34454898,
           34455733-34455804,34456027-34456168,34456544-34457064,
           34457166-34457739,34459164-34459269
          Length = 915

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 290 LQPTLTSGHNRAPGSETWFVCCTVVMKVNLVTRIYTE-TVSVLLPSLSLEAMNINNVSY 117
           L  T      + PG++ + V   ++ K + ++  ++E  VSV+ P       NINN+ Y
Sbjct: 248 LNMTTNQDVTKLPGNDDFQVPMPILQKASTISSNFSEFNVSVIFPDNMKNIDNINNIDY 306


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 296 RDLLEAKKRLDAANNRITGEFLYQGAKR 379
           RDL +  K LDAA+ R+ GEF  Q  +R
Sbjct: 895 RDLYDQGKILDAADQRLNGEFNQQQMER 922


>09_04_0740 + 19850745-19851254
          Length = 169

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 180 FCINPSY*IYFHYNCTTHEPCFGSWRSVVS*R*C-WLK 290
           FC +P Y +  +Y     + CFG W  +V    C WLK
Sbjct: 32  FCYSPYYQLQNYYRHGEFDNCFGKWGDLVD---CLWLK 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,320,022
Number of Sequences: 37544
Number of extensions: 353352
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)