Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j07
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    30   1.4  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    30   1.4  
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    28   7.7  
AF003739-4|AAB58066.1|   80|Caenorhabditis elegans Neuropeptide-...    28   7.7  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein
            C12C8.3b protein.
          Length = 1143

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 545  FDEPL-IGLPSLNLNVYADKDNKFCKAFTQS--YYKTFGGKTRLVDYSD-PVGAAKEINN 712
            FD P  I   SLN  V ADKDN   + F ++  +   FG + R V Y + P G A   +N
Sbjct: 888  FDRPAGITTNSLNNIVVADKDNHRVQVFDENGMFLLKFGDRGRAVGYFNYPWGVATNSHN 947


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein
            C12C8.3a protein.
          Length = 1147

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 545  FDEPL-IGLPSLNLNVYADKDNKFCKAFTQS--YYKTFGGKTRLVDYSD-PVGAAKEINN 712
            FD P  I   SLN  V ADKDN   + F ++  +   FG + R V Y + P G A   +N
Sbjct: 892  FDRPAGITTNSLNNIVVADKDNHRVQVFDENGMFLLKFGDRGRAVGYFNYPWGVATNSHN 951


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 545  FDEPL-IGLPSLNLNVYADKDNKFCKAFTQS--YYKTFGGKTRLVDYSD-PVGAAKEINN 712
            FD P  I   SLN  V ADKDN   + F ++  +   FG + R V Y + P G A   +N
Sbjct: 892  FDRPAGITTNSLNNIVVADKDNHRVQVFDENGMFLLKFGDRGRAVGYFNYPWGVATNSHN 951


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 545  FDEPL-IGLPSLNLNVYADKDNKFCKAFTQS--YYKTFGGKTRLVDYSD-PVGAAKEINN 712
            FD P  I   SLN  V ADKDN   + F ++  +   FG + R V Y + P G A   +N
Sbjct: 888  FDRPAGITTNSLNNIVVADKDNHRVQVFDENGMFLLKFGDRGRAVGYFNYPWGVATNSHN 947


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
 Frame = +2

Query: 401 SALYPILVAAGQLALFCKETTCDHLLKFL--NLKDKAEILALFPTIRRIFFDEPLIGLPS 574
           S +YPIL     L L   +    +LLK    N  D    + L+ TI      E L G   
Sbjct: 213 SLIYPILTTILILQLRTIKKRKANLLKSTSSNQSDNKFKMILWLTIT-FMLSEGLTGFTG 271

Query: 575 ----LNLNVYADKDNKFCKAFTQSYYKTF 649
                N+N++ D   KF + +  +YY  F
Sbjct: 272 WMQLYNMNIHIDTSQKFARFWVSTYYAMF 300


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 312 ASNKSLLASTNINVRTQQSARIRNMVRVLYSCNESKFSNSDL 187
           A+  SLL+STN+N   +    I N   ++Y   ES    S+L
Sbjct: 109 ANKTSLLSSTNVNRNMKNKNAIPNKFALIYQTVESLLGISNL 150


>AF003739-4|AAB58066.1|   80|Caenorhabditis elegans
           Neuropeptide-like protein protein12 protein.
          Length = 80

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 484 PKFERQSRDSRAFSYNKEDIFRRTPNRFAVTEFKCLR 594
           P F+RQ RD R   + K D +R  P +F   +++ L+
Sbjct: 25  PTFDRQDRDYRPLQFGKRDGYR--PLQFGKRDYRPLQ 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,211,033
Number of Sequences: 27780
Number of extensions: 332913
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)