Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j04
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 204 8e-54
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 125 8e-30
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 97 2e-21
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.54
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 27 2.9
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.6
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 6.6
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 8.8
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 204 bits (499), Expect = 8e-54
Identities = 97/248 (39%), Positives = 145/248 (58%), Gaps = 1/248 (0%)
Frame = +2
Query: 14 DHETLSAVVKFLDQCQHEDGGYGGGPRQYPHLGTTYAAVNALSIIGTDEAYDSIDRSSLQ 193
D + + Q + GG+ GG Q HL +TYA++ ++ + + +AY I+R L
Sbjct: 74 DSSVCERAISSVRQLKGPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLY 133
Query: 194 RFLWTVRDVDGSFALHKDGEQDIRGAYCAISIAKMTN-TYTEALFDKTAEWIVSCQTYEG 370
+L+++++ DGSF ++ +GE D R Y A+ ++ + + + LF+ T +W+ CQTYEG
Sbjct: 134 DWLFSLKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEG 193
Query: 371 GFAGCPGMEAHGGYAFCGIASLALLNRTQLCDIDSLLRWSVNRQMRIEGGFQGRTNKLVD 550
G +G P EAHGGY FC +A++ALL + L W V RQ GF GR+NKLVD
Sbjct: 194 GLSGVPYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVD 253
Query: 551 GCYSFWQGAAFPIISAILSKDNKELIETVLFNQSALQEYILICCQNRDGGLIDKPGKPRD 730
GCYS+W GA+ I+++ + + + + +N L YIL CCQ+ GGL DKP K D
Sbjct: 254 GCYSWWVGASHVIVASGYGSASHKSLPNLFYNPEKLLGYILQCCQSTSGGLRDKPPKRPD 313
Query: 731 IYHTCYGL 754
YHTCY L
Sbjct: 314 QYHTCYCL 321
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 125 bits (301), Expect = 8e-30
Identities = 71/240 (29%), Positives = 114/240 (47%)
Frame = +2
Query: 35 VVKFLDQCQHEDGGYGGGPRQYPHLGTTYAAVNALSIIGTDEAYDSIDRSSLQRFLWTVR 214
+V FL C E GG+ P H+ T AV L+++ ++ +D+ + ++ ++
Sbjct: 57 IVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAML---DSLHVVDKDKVASYIIGLQ 113
Query: 215 DVDGSFALHKDGEQDIRGAYCAISIAKMTNTYTEALFDKTAEWIVSCQTYEGGFAGCPGM 394
+ DGS + GE D R Y I+ + + +W++ C ++GGF CPG
Sbjct: 114 NEDGSMKGDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGA 173
Query: 395 EAHGGYAFCGIASLALLNRTQLCDIDSLLRWSVNRQMRIEGGFQGRTNKLVDGCYSFWQG 574
E+HG F +A+L +LN+ L D + LL W ++ + GG GR KL D CY +W
Sbjct: 174 ESHGAMVFTCVAALKILNKLDLID-EELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDL 232
Query: 575 AAFPIISAILSKDNKELIETVLFNQSALQEYILICCQNRDGGLIDKPGKPRDIYHTCYGL 754
+ II + D +LI+ +L Q A GG D+ D+YHTC+ L
Sbjct: 233 SPLAIIGKLDWIDRNQLIDFLLGTQDA-----------DSGGFADRKEDATDVYHTCFSL 281
Score = 48.0 bits (109), Expect = 1e-06
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 1/196 (0%)
Frame = +2
Query: 167 DSIDRSSLQRFLWTVRDVDGSFALHKDGEQDIRGAYCAISIAKMTNTYTEALFDKTAEWI 346
D ID+ + FL + G FA + + I A+ + M ++ DK A +I
Sbjct: 50 DQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYI 109
Query: 347 VSCQTYEGGFAGCPGMEAHGGYAFCGIASLALLNRTQLCDIDSLLRWSVNRQMRIEGGFQ 526
+ Q +G G E + + GI LA+L + + ++ + W + + +GGF
Sbjct: 110 IGLQNEDGSMKGDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDW-LMKCYNFDGGF- 167
Query: 527 GRTNKLVDGCYSFWQGA-AFPIISAILSKDNKELIETVLFNQSALQEYILICCQNRDGGL 703
L G S GA F ++A+ + +LI+ L + Q + GGL
Sbjct: 168 ----GLCPGAES--HGAMVFTCVAALKILNKLDLIDEELLGWWISER------QVKGGGL 215
Query: 704 IDKPGKPRDIYHTCYG 751
G+P + +CYG
Sbjct: 216 ---NGRPEKLPDSCYG 228
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 97.5 bits (232), Expect = 2e-21
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 21/241 (8%)
Frame = +2
Query: 95 QYPHLGTTYAAVNALSIIGTDEAYDSIDRSSLQRFLWTVRDVDGSF---ALHKDGEQDIR 265
Q P L T ++ L +G + IDR ++ F+ + G F A+ +QD+R
Sbjct: 93 QEPQLAGTVFSICCLLFLGDN--LSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMR 150
Query: 266 GAYCAISIAKMTN-TYTEALFDKTAEWIVSCQTYEGGFAGCPGMEAHGGYAFCGIASLAL 442
Y A +IA + + + ++ L + ++I SCQ YEGGF+ P EAH G FC +AS +L
Sbjct: 151 QLYMATTIASLLDFSLSDPLC--SIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSL 208
Query: 443 ---------LNRT----QLCD----IDSLLRWSVNRQMRIEGGFQGRTNKLVDGCYSFWQ 571
LN + L D ++ L+RW +RQ+ GG GRTNK VD CY++W
Sbjct: 209 ILKMIPNSSLNTSNQSYNLMDCVPKVERLIRWLASRQLS-SGGLNGRTNKDVDTCYAYWV 267
Query: 572 GAAFPIISAILSKDNKELIETVLFNQSALQEYILICCQNRDGGLIDKPGKPRDIYHTCYG 751
++ ++ A+ D E L++Y+L+ Q+ GG PG+ D+ H+ G
Sbjct: 268 LSSLKLLDALPFIDGGE-----------LEKYLLLHAQHALGGFSKTPGEFPDVLHSALG 316
Query: 752 L 754
L
Sbjct: 317 L 317
Score = 29.1 bits (62), Expect = 0.71
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 38 VKFLDQCQHEDGGYGGGPRQYPHLGTTYAAVNALSII 148
++++ CQ +GG+ P H G T+ A+ + S+I
Sbjct: 173 IQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLI 209
>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = -1
Query: 751 AITCMVNVSRLARLINQTTIPILTTYQNVFL*GRLIEKNCLNKFLIIF--*KYCTYNRKS 578
A+T + S+++RLINQ P+L+ Q + +++ L++F KY ++++KS
Sbjct: 189 ALTLKLQFSKVSRLINQGLTPLLSRLQLIDKNIKIVGA-IFGIILLLFRLKKYISHSKKS 247
Query: 577 STLPKR 560
+ P+R
Sbjct: 248 AFSPQR 253
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 158 EAYDSIDRSSLQRFLWTVRDVDGSFALHKDGEQDIRGA 271
E + ++D+ S R W RD+ A+ K +DI+GA
Sbjct: 20 EVHPNVDKKSFIR--WRQRDIHEKRAVRKQKMEDIKGA 55
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 580 SSTLPKRITSIYKFVCPSLKSTLYPH 503
+ST PK IT++Y + P+ + Y H
Sbjct: 1368 ASTFPKSITAVYSWGKPNFRYVQYIH 1393
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 650 SALQEYILICCQNRDGGLID 709
S L Y + CC+N +GG++D
Sbjct: 512 SELLNYYIECCKNYNGGVMD 531
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 287 IAKMTNTYTEALFDKTAEWI 346
++K++NTY L DK+ E++
Sbjct: 455 VSKLSNTYFRCLHDKSVEYV 474
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 167 DSIDRSSLQRFLWTVRDVDGSFALHKDGEQDIRGA 271
DS RSS Q ++ D G +L DG+ D RG+
Sbjct: 105 DSSKRSSSQDEFESLFDRYGQLSLKDDGKADFRGS 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,745
Number of Sequences: 5004
Number of extensions: 72929
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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