Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3j04
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 422 HRMHSHHVLPYQDNQQSHPH 363
           H+M S +++PY  +   HP+
Sbjct: 67  HKMASMNIVPYHMSPYGHPY 86


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 686 NRDGGLIDKPGKPRDIYHTC 745
           N +  L+  PGK  +IY+ C
Sbjct: 194 NGEWDLLGVPGKRNEIYYNC 213


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 404 HVLPYQDNQQSHPHMSDN*QSILPFYQITL 315
           H+L   D     PH S N  +IL +Y+ +L
Sbjct: 294 HILCMSDLHWQLPHNSTNPPNILLYYRDSL 323


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/30 (20%), Positives = 17/30 (56%)
 Frame = -3

Query: 476 VNLYHIIVFYLIELRMRFHRMHSHHVLPYQ 387
           +++ H + ++  ++ +  H  H H V P++
Sbjct: 190 LDVEHRVAYWREDIGINLHHWHWHLVYPFE 219


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 83   HHNRHLHVDTDLRILLLQKES 21
            +HN  LH+  D  + +L +E+
Sbjct: 1481 NHNEKLHIPKDKSVSVLSREN 1501


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 413 HSHHVLPYQDNQQSHPH 363
           H HH   Y  ++ S PH
Sbjct: 319 HQHHPSQYHPHRGSSPH 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,842
Number of Sequences: 438
Number of extensions: 4453
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)