Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3j03
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 27 2.5
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 2.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 7.6
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.6
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 7.6
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 25 7.6
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 10.0
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 25 10.0
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 25 10.0
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/97 (19%), Positives = 44/97 (45%)
Frame = +1
Query: 259 SNFTNPYSSSIINHQKGKIPQEEINKARETYFRIFNATMKPTSSIGELFPIVPAYTNVSR 438
S+ S I+ + +G +P +I++ + I +A++ P I + + ++
Sbjct: 67 SSIEKKKSELIVRNSEG-LPVMDIHEEVDKDGNIISASVAP-QRISSVIDYADVFRSLPG 124
Query: 439 INNIHSNCGEDTSAQNLETARSLVSALLQQINFRPRE 549
NI + DTS++ E + ++ + IN++ E
Sbjct: 125 FKNIENGGNRDTSSRIEELSEEEINDSTKNINYKAPE 161
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 64 VKFILSSFTCLTFCFKTYQVHQINES 141
VKF S+ C T FKT QV+Q+ E+
Sbjct: 415 VKFSDSTMLCATTLFKTPQVYQLFEN 440
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 472 TSAQNLETARSL---VSALLQQINFRPRERIKRKSIKGRSQIKRFQK 603
TS N+ + S+ +S++ + PR+ I K ++ S ++RF++
Sbjct: 1370 TSGMNMPISSSISAKISSIQNSTKYSPRKPIPAKDVRVSSLVRRFEE 1416
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 88 TCLTFCFKTYQVHQINESAYLVIAVP 165
T T CF +Y VH + + +I VP
Sbjct: 422 TVQTVCFLSYLVHSLKQHGPFLIVVP 447
>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 340 RETYFRIFNATMKPTSSIGELFPIVP 417
RET F I N ++ IG L P+VP
Sbjct: 51 RETLFGIHNLSVASPFMIGSLQPLVP 76
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 130 INESAYLVIAVPD-FNDNNETRHVSETXXXXXXXXXKPKTSYKGSNFTNPYSSSI 291
+ E +YL P + ++ ++ SET K S +G NFT P S S+
Sbjct: 351 VEEISYLHYDEPSQYYFSSPSKLSSETTKVHRGCENTEKPSEEGKNFTTPLSDSV 405
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 478 AQNLETARSLVSALLQQINFRPRERIKR--KSIKGRSQIKRFQKNTD 612
++ +ETA + + I R R+R K+ K+ R + +FQ NT+
Sbjct: 37 SEQIETAADAL--ITSNIGHRSRQRKKKTKKATNSRKPLSKFQSNTE 81
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 271 NPYSSSIINHQKGKIPQEEINKARETYFR 357
N + I N+ +PQ+ +++ R+ +FR
Sbjct: 226 NTFLRDITNNMSSSVPQDVLSQLRQFFFR 254
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 439 INNIHSNCGEDTSAQNLETARSLVSALLQQINFRPRERIKRKSIKGRSQIKRFQKNTD 612
++++++ C E QN T L S NFRP+ K+KS+ QKN +
Sbjct: 40 VHSLNNTCSE----QNSGTKDYLNSLQFLPSNFRPKTHKKKKSVSSYLS-STIQKNAN 92
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 10.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +1
Query: 544 RERIKRKSIKGRSQIKRFQKNTDNW 618
+ + + I+ ++KRFQ+ D W
Sbjct: 62 KTHLNEEEIRTNERVKRFQRRVDEW 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,678
Number of Sequences: 5004
Number of extensions: 45743
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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