Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i21
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.1  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    27   3.3  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   3.3  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   3.3  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.4  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   4.4  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   5.8  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    26   5.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   5.8  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   7.7  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 58   PSDWESICHRIWSDMTPTHALANNYHRRVQNASHHH 165
            PS+WE I  +++ D+  T  L ++Y     N   +H
Sbjct: 1296 PSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREVYH 1331


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 173 LRVWWWLAFWTRR-W*LFARACVGVISDHIRWQIL 72
           L +WWW+ F T   +      C G  S  + W I+
Sbjct: 197 LGLWWWMLFVTASFYHTTFEKCTGFFSGILEWSIV 231


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 16  LHAAS*YQPPHSVEPSD---WESICHRIWSDMTPTHAL 120
           +H+ S      S+EPS     E  CH   SDM PTH L
Sbjct: 193 IHSLSNPSTASSLEPSSPLGSEDECHPPTSDMQPTHEL 230


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 519 EKSGYRLTGERECARATDGRDYAIRCPKEQTAYCGPNRQPPPPRCVELVPDD 674
           E    ++  ERE A+A    +   + P  +       R PPPP   E+ P++
Sbjct: 656 EAKRQKVQAEREAAKAATKSEAEKQKPSGKFEEGTGGRAPPPPPAEEVAPEN 707


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 104 LQHMLWQTTTTAVSRMQATTTPEVPWSGPSGP 199
           +  +L QTTTT  +  Q   TP+V  S P  P
Sbjct: 328 IMSLLRQTTTTPFAGNQVMPTPQVQGSRPPPP 359


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 267 SATIRSCNNAAQFAKKNTQSTTSKIPSSSML 359
           SA   S  +++  A  +T STTS  P+SS L
Sbjct: 79  SAASSSLTSSSSLASSSTNSTTSASPTSSSL 109


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +3

Query: 471  YEQEASQKQSQNKSLTEKSGYRLTGERECARATDGRDYAIRCPKEQTAYCGPNRQPPPPR 650
            Y +   +K     SL  K    +  + EC RA    DY  R  K+ T       QPP  R
Sbjct: 1250 YRKSIHKKCRVGSSLLVKE--EVLSKCECTRADFECDYNYRRLKDGTCVLVSGLQPPDTR 1307

Query: 651  CVELVPDDA 677
              +   DDA
Sbjct: 1308 EEQCSVDDA 1316


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 310 KKTRSLQRRKFHLVVCLKCVIHIRAVTQPTLD 405
           K T++L  +  HL+ C KC + I  +    LD
Sbjct: 208 KLTKALAAQHLHLLSCQKCPLSIHPLCNRILD 239


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 280 DPAIMLHNLRKKTRSLQRRKFHLVVCLKCVIHIRAVTQPTLDADRVATTWGVA 438
           D  ++ H    KTR + RR   L VC   ++       P + +DR +  W VA
Sbjct: 120 DARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDR-SWVWTVA 171


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 337 FDVVDCVFFFANCAALL 287
           F +V CVFF  +CA L+
Sbjct: 199 FPIVQCVFFTLHCAVLI 215


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 397 LVVSQPLCVSHILSILLDGIFDVVDCVFFFANCAALLQDRIVADG 263
           L+  QP CV +I  IL+D   D     +F     AL    I   G
Sbjct: 221 LLQKQPDCVRNIKHILIDEFQDTSKIQYFLVKLLALQNSDITIVG 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,083
Number of Sequences: 5004
Number of extensions: 59099
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)