Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3i21
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82279-1|CAB05259.2| 321|Caenorhabditis elegans Hypothetical pr... 31 1.0
AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical ... 30 1.8
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 3.1
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr... 29 4.1
U64840-1|AAB04959.2| 484|Caenorhabditis elegans Glutamate-gated... 28 5.4
AJ243914-1|CAB51708.1| 484|Caenorhabditis elegans Glutamate-gat... 28 5.4
AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical... 28 5.4
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 7.1
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 7.1
Z82093-3|CAB05020.1| 222|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z82279-1|CAB05259.2| 321|Caenorhabditis elegans Hypothetical
protein R03C1.1 protein.
Length = 321
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 125 TTTTAVSRMQATTTPEVPWSGPSGPRRTQGS 217
TTTT +TTT + P S P P +TQGS
Sbjct: 139 TTTTQAPTTTSTTTTQSPVSYPQVPTQTQGS 169
>AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical
protein F14H12.3 protein.
Length = 257
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 510 SLTEKSGYRLTGERECA---RATDGRDYAIRCPKEQTAYCGPNRQPPPP 647
S+T SG +T R+C+ T G CP++ C QPPPP
Sbjct: 152 SVTCGSGGSITRSRQCSCGSGCTGGSVEQEPCPQQAACPCTTCNQPPPP 200
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 20 TQHHDTSHHIP*NHQTGKVSAIVYGPI*LQHMLWQ 124
+QHH HH P Q G+ S + PI Q+ WQ
Sbjct: 89 SQHHHPPHHHPTQFQRGQ-SLALSNPIPTQNAFWQ 122
>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical protein
B0412.3 protein.
Length = 1107
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 288 NNAAQFAKKNTQSTTSKIPSSSMLKMCDTHKGCDTTNAGCGQS 416
NN + QS S + SS M D CDT N G G++
Sbjct: 886 NNCDHILNASIQSAASIVISSVEFLMADVVTLCDTINGGSGKN 928
>U64840-1|AAB04959.2| 484|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 3 protein.
Length = 484
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 221 TYYLESFLGHWVPTTALRVWWWLAFWTRRW*LFARACVGV 102
+YYL L ++P+T L + W++FW R + AR +GV
Sbjct: 245 SYYL---LQLYIPSTMLVIVSWVSFWLDRGAVPARVTLGV 281
>AJ243914-1|CAB51708.1| 484|Caenorhabditis elegans Glutamate-gated
chloride channelsubunit protein.
Length = 484
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 221 TYYLESFLGHWVPTTALRVWWWLAFWTRRW*LFARACVGV 102
+YYL L ++P+T L + W++FW R + AR +GV
Sbjct: 245 SYYL---LQLYIPSTMLVIVSWVSFWLDRGAVPARVTLGV 281
>AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical
protein Y39G10AR.7 protein.
Length = 474
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 624 PNRQPPPPRCVELVPDDAC 680
PNR+PP P +E +P+ AC
Sbjct: 394 PNRRPPIPPRMEPIPEQAC 412
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 656 NASGRWGLTVWATISCLFFGTSNGIITTVSSTCAFSLSSEAVPA 525
NA+ + +T +T+SCL SNG +T +T ++ + PA
Sbjct: 1477 NANWIYDITSVSTVSCLISTASNG-VTAPPTTSTTTVKDDTAPA 1519
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 656 NASGRWGLTVWATISCLFFGTSNGIITTVSSTCAFSLSSEAVPA 525
NA+ + +T +T+SCL SNG +T +T ++ + PA
Sbjct: 1477 NANWIYDITSVSTVSCLISTASNG-VTAPPTTSTTTVKDDTAPA 1519
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 656 NASGRWGLTVWATISCLFFGTSNGIITTVSSTCAFSLSSEAVPA 525
NA+ + +T +T+SCL SNG +T +T ++ + PA
Sbjct: 1477 NANWIYDITSVSTVSCLISTASNG-VTAPPTTSTTTVKDDTAPA 1519
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 656 NASGRWGLTVWATISCLFFGTSNGIITTVSSTCAFSLSSEAVPA 525
NA+ + +T +T+SCL SNG +T +T ++ + PA
Sbjct: 1477 NANWIYDITSVSTVSCLISTASNG-VTAPPTTSTTTVKDDTAPA 1519
>Z82093-3|CAB05020.1| 222|Caenorhabditis elegans Hypothetical
protein ZK39.4 protein.
Length = 222
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 262 GSGHGGREPVGGGQHTTLSPSWATGSRP 179
G G+GG P GGG + W +RP
Sbjct: 33 GGGNGGGRPPGGGANGGCGAGWRRLNRP 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,557
Number of Sequences: 27780
Number of extensions: 358972
Number of successful extensions: 1523
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -