Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3i20
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 83 4e-17
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 31 0.23
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 31 0.23
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 0.52
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 2.1
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 27 2.8
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 4.9
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 26 6.4
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 26 6.4
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 6.4
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.5
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 25 8.5
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 83.0 bits (196), Expect = 4e-17
Identities = 38/106 (35%), Positives = 63/106 (59%)
Frame = +2
Query: 386 DEENIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLD 565
DE+ +EQ + N +RP ++ SKAK+AK+VR+L+D F
Sbjct: 37 DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSG 96
Query: 566 LEAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIALYFDTGMYT 703
+ + +++++ +CI+WA +E+RTFLRQ+LE +LI+LY+D YT
Sbjct: 97 EKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYT 142
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = -1
Query: 715 SKASRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI*EEVNKGTY 536
++ +RI + + N CF R+P L Y L +L Y C I EV +
Sbjct: 9 TQVNRIMKNSSLVQN-ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSASS 67
Query: 535 QFRSFSF 515
+FRSF+F
Sbjct: 68 KFRSFTF 74
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = -1
Query: 715 SKASRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI*EEVNKGTY 536
++ +RI + + N CF R+P L Y L +L Y C I EV +
Sbjct: 9 TQVNRIMKNSSLVQN-ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSASS 67
Query: 535 QFRSFSF 515
+FRSF+F
Sbjct: 68 KFRSFTF 74
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = -1
Query: 715 SKASRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI*EEVNKGTY 536
++ +RI + + N CF R+P L Y L +L Y C I EV +
Sbjct: 9 TQVNRIMKNSSLVQN-ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSASS 67
Query: 535 QFRSFSF 515
+FRSF+F
Sbjct: 68 KFRSFTF 74
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = -1
Query: 715 SKASRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI*EEVNKGTY 536
++ +RI + + N CF R+P L Y L +L Y C I EV +
Sbjct: 9 TQVNRIMKNSSLVQN-ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSVSS 67
Query: 535 QFRSFSF 515
+FRSF+F
Sbjct: 68 KFRSFTF 74
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 402 LMFXXXXXXXSPVLTILSVMRTSSSLFVDDETRDL 298
L+F P LTI +++ T S DDE R++
Sbjct: 1038 LVFGSIFGYLEPALTITAILSTKSPFLGDDEAREI 1072
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 369 PVLTILSVMRTSSSLFVDDETRD 301
P+ T+L RT + LF+DD TR+
Sbjct: 172 PMPTLLPYERTVNGLFIDDTTRE 194
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 559 EEVNKGTYQFRSFSFTYEAQKWS 491
E + KG+Y F FS T +KW+
Sbjct: 75 ESLAKGSYSFTGFSITDLQEKWN 97
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +2
Query: 260 INIHSMAGAMLFERSRVSSSTNRDEDVRM-TDKMVSTGE----LPEDDEENIRAKEQGIL 424
+N+ S+ + V SS +D+ + T + TG LPED E+I + QGI+
Sbjct: 290 VNLESITVTNSTSSNNVQSSKRSSKDIEVNTTVTLDTGTVYIYLPEDTVESIADQYQGIV 349
Query: 425 N 427
+
Sbjct: 350 S 350
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 219 TILLFIEYFYSVSV*IYTVWPER 287
+I L+I+Y YS +V YT W ++
Sbjct: 310 SIRLWIDYLYSTAVDFYTNWIQK 332
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +2
Query: 260 INIHSMAGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIR 403
+N + M+G FE ++ S +TN ++ +T ++ ++D +N R
Sbjct: 619 LNSNGMSGTEGFENTQTSITTNDNQSSILTSSDQTSPFATDEDRQNSR 666
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 317 STNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILN 427
S + D + R D G+L +EE+I+ E +LN
Sbjct: 404 SPHNDAETRADDDAYLMGDLFNQEEEDIQDTENDLLN 440
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 662 LPKTAEERCVVLPWPILCTLYTTVLLYRSL 573
LPK A++R V+L P+L T + +L ++L
Sbjct: 127 LPKDAQDRLVLLLDPLLATGNSVILAIQTL 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,866
Number of Sequences: 5004
Number of extensions: 64884
Number of successful extensions: 212
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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