Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i20
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0012 + 22145111-22146388                                         83   2e-16
03_05_0106 + 20880069-20881001                                         41   0.001
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   2.9  
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774...    29   2.9  
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404...    29   5.1  
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803...    29   5.1  
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    29   5.1  

>04_04_0012 + 22145111-22146388
          Length = 425

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 42/109 (38%), Positives = 55/109 (50%)
 Frame = +2

Query: 377 PEDDEENIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDF 556
           P    E +R KE  I N                     RPF SLI KAK AK+VR ++D 
Sbjct: 39  PSSSAEALRTKELAITNLTNYLTKENRAEELRNLLTQLRPFFSLIPKAKTAKIVRGIIDA 98

Query: 557 FLDLEAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIALYFDTGMYT 703
              +     +++ LCKE +EW + E+RTFLRQ +EARL AL  +   YT
Sbjct: 99  VAKIPGTSELQISLCKEMVEWTRAEKRTFLRQRVEARLAALLLENQEYT 147


>03_05_0106 + 20880069-20881001
          Length = 310

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 611 IEWAKEERRTFLRQSLEARLIALYFDTGMYT 703
           +EW + E+RTFLRQ +EARL AL  +   YT
Sbjct: 2   VEWTRAEKRTFLRQRVEARLAALLLENQEYT 32


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 662  LPKTAEERCVVLPWPILCTLYTTVLLYRSL 573
            +P +A  RC+VL W  L    +++LL  SL
Sbjct: 931  IPSSAHRRCLVLLWTTLLVFMSSILLVLSL 960


>04_04_1342 +
           32775582-32775796,32776589-32776794,32777356-32777492,
           32778758-32778860,32778961-32779079,32779282-32779346,
           32779426-32779642,32779713-32779934
          Length = 427

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 RLQIVSEKVVDDFANYNKITKKSVPL 214
           RL I S+KV+ + ANY   +  S+PL
Sbjct: 366 RLDIPSDKVISNLANYGNTSAASIPL 391


>07_03_1281 -
           25439634-25439750,25439868-25440071,25440328-25440402,
           25440477-25440631,25440704-25440824,25440946-25441020,
           25441216-25441353,25441617-25441727,25441883-25441987,
           25442061-25442139,25442488-25442549,25442634-25442699,
           25442812-25442907,25443353-25443403,25443629-25443709
          Length = 511

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 542 SLVDFFLDLEAGIGIEVQLCKECIEWAKEE 631
           SLV +FLD E G G+EV   K+ +E A+ +
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSK 245


>04_01_0611 -
           8029101-8029205,8029985-8030107,8030191-8030556,
           8030639-8031124
          Length = 359

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 711 KLPVYIPVSKYRAISLASKDCRRKVRRSSLAHSMHSLHNCTSIPIPASKSRKKSTR 544
           K  V +P        +A +D ++K+R+    HS HS     + P+   K +KK  +
Sbjct: 201 KRVVDLPARGEDGAMVAEEDRKKKLRKEFNFHSFHSKGKDDTTPVKNLKDKKKEVK 256


>01_06_0358 -
           28677781-28677901,28678327-28678430,28678542-28678625,
           28679221-28679265,28679523-28679594,28679721-28679759,
           28679966-28680061,28680492-28680566,28681717-28681764,
           28681888-28681971,28682141-28682341,28682394-28682561,
           28683232-28683372,28683470-28683517,28683845-28684087,
           28684184-28684297,28685134-28685163,28685361-28685951,
           28686033-28686620,28686744-28686863,28687764-28687938,
           28688397-28688562,28688653-28688755,28689227-28689319,
           28690759-28690918,28691754-28691872
          Length = 1275

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 199 LCNFVVIRKVIDDLFRNNL*TRIKLPAHL 113
           L + + IR++IDD  +N++ TR  L AHL
Sbjct: 674 LLHKLAIRRIIDDYKKNSVNTRFSLLAHL 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,508,124
Number of Sequences: 37544
Number of extensions: 416355
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)