Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i20
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    89   2e-18
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    89   2e-18
Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical pr...    62   5e-10
Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 54/144 (37%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
 Frame = +2

Query: 275 MAGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILNXXXXXXXXX 454
           M+G  + +        N    +R    +V +   P   +++I+ KE  I+          
Sbjct: 1   MSGGTIMDTMTSLPHQNDQNVIRHLTNLVKS---PASGDDDIKKKEDSIMELGNILAQNK 57

Query: 455 XXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDLEAGIG-IEVQLCKECIEWAKEE 631
                      TRPFL  + KAKAAKLVR LVD  L ++   G I+V L KECI+WA E+
Sbjct: 58  QTEELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQ 117

Query: 632 RRTFLRQSLEARLIALYFDTGMYT 703
            RTFLRQ+L ARL+ LY D   YT
Sbjct: 118 NRTFLRQTLTARLVRLYNDLQRYT 141


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 54/144 (37%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
 Frame = +2

Query: 275 MAGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILNXXXXXXXXX 454
           M+G  + +        N    +R    +V +   P   +++I+ KE  I+          
Sbjct: 19  MSGGTIMDTMTSLPHQNDQNVIRHLTNLVKS---PASGDDDIKKKEDSIMELGNILAQNK 75

Query: 455 XXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDLEAGIG-IEVQLCKECIEWAKEE 631
                      TRPFL  + KAKAAKLVR LVD  L ++   G I+V L KECI+WA E+
Sbjct: 76  QTEELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQ 135

Query: 632 RRTFLRQSLEARLIALYFDTGMYT 703
            RTFLRQ+L ARL+ LY D   YT
Sbjct: 136 NRTFLRQTLTARLVRLYNDLQRYT 159


>Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical
           protein F59B2.5 protein.
          Length = 468

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
 Frame = +2

Query: 491 RPFLSLISKAKAAKLVRSLVDFFLDLEAGIGI--------EVQLCKECIEWAKEERRTFL 646
           R F  L+ KA+A+KL+R +V+  L ++ G+G         ++ L   CI WA   +R FL
Sbjct: 110 RSFYDLVGKARASKLIRDIVEHALTIDQGVGPALDHGKKEKIDLLTNCIGWATSNKREFL 169

Query: 647 RQSLEARLIALYFDTGMYTGS 709
           R+SL+ARLI LY D   +T +
Sbjct: 170 RRSLQARLIRLYNDIRDFTNA 190


>Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical
           protein R05A10.7 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
 Frame = -1

Query: 526 SFSFTY-EAQKWSGGFDKF-CQLLSLPFLFVFLAEVKDTLLLCSYVFF---IIFGQLASA 362
           S+ F Y + Q  S    KF C LL        L E K+   L + +     +IF    S 
Sbjct: 10  SYDFCYTDPQNTSIIGKKFDCSLLDTLENLNLLGETKEVFSLSNLIQNENDLIFASATSD 69

Query: 361 DHFVSHADVFVSVRR**DA*SFK*HRSGHTVYIYTLTL*KYSMNS 227
           DHF    D F S+R+         +   HT  +Y L L +Y +NS
Sbjct: 70  DHFNFSMDSFHSIRK---------YYPNHTYILYGLGLSEYYINS 105


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +3

Query: 279 PERCYLKDHASHHRRTETKTSA*LTKWSALASCPKMMKKT*EQRSRV 419
           P R YL   ASH  R   +  A L  W   A+CP +   T E+R  V
Sbjct: 766 PGRHYLC--ASHFNRNSLRYHAGLGLWRRAAACPVLACTTDEERQEV 810


>Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical
           protein F15H10.10 protein.
          Length = 262

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 350 QSCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTIKVFDE*QDCITTE 207
           + CG +    S  RR   Q++    YC++ YA   K+ +  + C   +
Sbjct: 39  EECGHIYKSCSKRRRRNSQVSRTSKYCLFFYADRDKILNTEKQCFDVQ 86


>Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A5.2 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 332 EDVRMTDKMVSTGELPEDDEENIRAKEQGI 421
           EDVRM + +    E+  DD +NI+ K Q +
Sbjct: 214 EDVRMEETIAKIDEVRIDDNKNIQEKSQRV 243


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 668 LIALYFDTGMYTGSFGPCYCT 730
           L+++Y +T  +T S GP YCT
Sbjct: 621 LVSIYDNTQWHTASLGPQYCT 641


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 296 ERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQ 415
           E +  SS   +DE V  T++     E P  DEE+  A+E+
Sbjct: 171 EEAPASSEEKKDEPVVNTEEKKDAAEAPAADEESEAAEEK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,159,120
Number of Sequences: 27780
Number of extensions: 374335
Number of successful extensions: 1003
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)