Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i17
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    80   3e-16
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    74   2e-14
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    69   7e-13
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    61   1e-10
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.5  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    27   3.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   4.7  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   4.7  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   4.7  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   8.2  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
 Frame = +2

Query: 188 RKPPYTYPELIERALRENGE--LTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHF 361
           +KPPY+Y  +I +A+  + E  +T+S IY WIS  +P+Y+     W+NS+RHNLS+N  F
Sbjct: 222 KKPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLNKAF 281

Query: 362 RKGAR--APQGAGHLWSLAANAID--LLPLRNTPMPEEKAAE-PLHTAKIIGFPKV 514
           RK  R    QG G  WS+     +  +   R TP     ++  PL   K  G P +
Sbjct: 282 RKVPRKSGEQGKGMKWSIVPEFREEFIAKTRKTPRKRSPSSPVPLLAKKREGSPSL 337


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +2

Query: 188 RKPPYTYPELIERALRENGE--LTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHF 361
           +KPPY+Y  LI  ++  + +  LT+S IY WIS+ F FY  ++  W+NS+RHNLS+N  F
Sbjct: 127 KKPPYSYAMLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHNLSLNKAF 186

Query: 362 RKGARAPQ--GAGHLWSL 409
            K  R     G GH WS+
Sbjct: 187 MKIERPRNLPGKGHFWSI 204


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
 Frame = +2

Query: 191 KPPYTYPELIERALRE--NGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHFR 364
           KPP +Y  LI  A+ +  N +LT+SGIY WI + F +Y  +D  W+NS+RHNLS+N  F 
Sbjct: 81  KPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFI 140

Query: 365 KGARAPQG---AGHLWSL 409
           K    P+G    GH W++
Sbjct: 141 K-VEKPKGKTLKGHYWTI 157


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
 Frame = +2

Query: 182 AVRKPPYTYPELIERAL--RENGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINP 355
           A +KP  +Y  LI R L    N ++T+  I +WI++ + +Y+     W NS+RHNLS+N 
Sbjct: 288 ATQKPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHNLSLNK 347

Query: 356 HFRKGARAPQ--GAGHLWSLAANAIDLLP---LRNTPMPEEKAAEPLH 484
            F +  R     G G  W L  + ID       R T  P   A    H
Sbjct: 348 AFIRIPRRQNEPGKGSFWMLDPSYIDQFEGNFFRRTKKPTPSATPAAH 395


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 185 VRKPPYTYPELIERALRENGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLS 346
           V+   +T   L+   L++N EL  S +  +  +   FY ++DE W +     LS
Sbjct: 453 VKNSAWTQLGLVHLVLQQNLELLESVMLDYAFEGIAFYGSSDEAWASGNYTTLS 506


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 484 HCQNNWFP*SNRIGRGCHSSSKHYSRSRFVQWKHNVPESSLRRASDQ 624
           H +N++ P  +R     H + K + RSR+ + +   P S++   SDQ
Sbjct: 188 HYENSYRP--SRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQ 232


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = +2

Query: 200 YTYPELIERALRENGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHFRKGA 373
           Y YP LI  A+R     +   I+ W++   P      +    ++R  ++     R G+
Sbjct: 356 YDYPTLIRLAIRNTLSPSKDEIFNWLAQNVPLLPTFHDSASEAIRWMVNKGQLVRSGS 413


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 550  HYSRSRFVQWKHNVPESSLRRASDQGMRSDHCRL 651
            HY   +++ WKH  P     RA D    SD  RL
Sbjct: 971  HYGFRKYIDWKHLHPVYQANRAQD----SDFARL 1000


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 325 ILPAFVVGFIERETIRYPLIDPGYSQLSVLP 233
           +L  F++G   +  IRY + + G+  LSVLP
Sbjct: 180 VLYHFIIGDTVKGEIRYFVPESGFGYLSVLP 210


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  RRKLSKNIDNDNDCASLAWLLNFRLDEVVNVRVPD 136
           ++ +S N+     C S+AWL++   D+V++  +PD
Sbjct: 183 QQMVSSNVSRPIICLSMAWLVSD--DKVIDASLPD 215


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 557 PDQDLFSGSTMFLNPVSAEQVIRECGLITVD*RSRLSR 670
           P +DL    T  LNP++  Q  +EC  I V+  S +++
Sbjct: 190 PLEDLRLTLTECLNPINIVQAPKECAAILVNLMSNITQ 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,119
Number of Sequences: 5004
Number of extensions: 70359
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)