Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i14
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    24   3.5  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    24   3.5  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    24   3.5  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    24   3.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    23   8.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    23   8.0  

>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 198 YLYNICMSKKHCTPIKDYKDA 136
           ++Y+IC   K CT +  Y++A
Sbjct: 242 WVYSICHLLKQCTSVTTYENA 262


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 198 YLYNICMSKKHCTPIKDYKDA 136
           ++Y+IC   K CT +  Y++A
Sbjct: 242 WVYSICHLLKQCTSVTTYENA 262


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 198 YLYNICMSKKHCTPIKDYKDA 136
           ++Y+IC   K CT +  Y++A
Sbjct: 214 WVYSICHLLKQCTSVTTYENA 234


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 198 YLYNICMSKKHCTPIKDYKDA 136
           ++Y+IC   K CT +  Y++A
Sbjct: 242 WVYSICHLLKQCTSVTTYENA 262


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 23  YRLSQLLRSLGLPDCYNK*YF 85
           ++  ++LR++ L +CY K YF
Sbjct: 254 FKEKEILRNICLDECYLKAYF 274


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 234 LNPKANNTGLFYYLYNICMSKKHCTP 157
           LN  +NNT  F+Y+  + +S+   TP
Sbjct: 121 LNESSNNTWHFHYIVLLWLSQALNTP 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,624
Number of Sequences: 5004
Number of extensions: 16514
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)