Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i14
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229...    26   4.9  
11_02_0109 + 8375699-8375776,8376461-8376877,8376980-8377243,837...    25   6.5  
04_03_0642 + 18289461-18290897,18291586-18291666                       25   8.6  

>07_03_0293 +
           16321539-16321893,16322020-16322207,16322881-16322904,
           16323497-16323550,16323854-16323944,16324715-16324815,
           16324949-16324999,16326626-16326754,16327772-16327834,
           16327928-16328171,16329628-16329776,16329855-16329944,
           16330343-16330477,16330579-16330635,16331079-16331135,
           16332299-16332336,16332532-16332601,16332971-16333207
          Length = 710

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 227 LKQIIQAYFTICIIYVCQKSTAPLLKITKMPKALTIEIYNQST 99
           LK +I    T+CI++      AP+L +  +  ++ + ++ +ST
Sbjct: 204 LKSVITG--TLCILFTLSTELAPVLGLLMVSVSVLVALFKRST 244


>11_02_0109 +
           8375699-8375776,8376461-8376877,8376980-8377243,
           8378402-8378806
          Length = 387

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 218 IIQAYFTICIIYVCQKSTAPLLKITKMPK 132
           +   YFT CI    +KS  P++ ++  PK
Sbjct: 358 VFARYFTNCIESEVEKSPVPVITLSLQPK 386


>04_03_0642 + 18289461-18290897,18291586-18291666
          Length = 505

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/42 (21%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 218 IIQAYFTICIIYVCQKSTAPLLKITK-MPKALTIEIYNQSTK 96
           +++ +F  CII++C      + ++T+ + K+L +++ +  T+
Sbjct: 185 VVRNHFNNCIIWICVSDEFEVNRLTRDVLKSLGVKLQDSDTR 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,410,942
Number of Sequences: 37544
Number of extensions: 75303
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)