Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i14
         (279 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical pr...    26   3.5  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    25   8.0  
Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical pr...    25   8.0  
AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein ...    25   8.0  

>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 20   NYRLSQLLRSLGLPDCYNK*YFMLYT 97
            +Y L  ++ S+G P+ YNK Y  ++T
Sbjct: 3737 SYELEGVISSIGYPNGYNKSYTQIFT 3762


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 20   NYRLSQLLRSLGLPDCYNK*YFMLYT 97
            +Y L  ++ S+G P+ YNK Y  ++T
Sbjct: 3737 SYELEGVISSIGYPNGYNKSYTQIFT 3762


>Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical
           protein T23G4.4 protein.
          Length = 689

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -2

Query: 224 KQIIQAYF-----TICIIYVCQKSTAPLLKITKMPKALTIE 117
           K+I+  YF     +IC +Y C  +TA  L  +   KAL  E
Sbjct: 78  KRILPLYFMFIFGSICALYTCFPNTAIFLNQSSAQKALIFE 118


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 133 LGIFVIFNRGAVLF*HTYIIQIV 201
           LG  ++FNR +  F +TYI+  V
Sbjct: 396 LGFLILFNRISTFFQNTYIVNQV 418


>Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical
          protein F01G10.8 protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 5  AIMKPNYRLSQLLRSLGLPDCYN 73
          +I  PN  ++  L    +PDCYN
Sbjct: 11 SINNPNMPINDWLEDAPMPDCYN 33


>AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein
          protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 5  AIMKPNYRLSQLLRSLGLPDCYN 73
          +I  PN  ++  L    +PDCYN
Sbjct: 11 SINNPNMPINDWLEDAPMPDCYN 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,553,512
Number of Sequences: 27780
Number of extensions: 90161
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)