Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3i11
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 30 0.091
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 0.85
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 25 4.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 4.5
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 4.5
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 4.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 6.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 7.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 24 7.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 24 7.9
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 7.9
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 30.3 bits (65), Expect = 0.091
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 150 RGKQKLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAE--EKETIRLLETGKLFESDKK 323
R +Q+ +N+ + EA+++ ++D E + K+ ++ E EKE IRL+E K E++++
Sbjct: 107 RLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQR 166
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 0.85
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 159 QKLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKETIRLLE 293
++L + E RE+E K + I AK K+++ EKE IRL E
Sbjct: 96 ERLKREKERQQREQEKKLREQEKIA-AKKMKELEKLEKERIRLQE 139
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 168 YNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKE 275
Y E REEEAKK E A++++ + A E E
Sbjct: 206 YRDPEEVEREEEAKKAAAAAAEEAQVEEAVAAAEFE 241
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 24.6 bits (51), Expect = 4.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 144 YARGKQKLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKETIRLLET 296
Y+ K Y + E K ++ + A KK+DAE +ET LL T
Sbjct: 159 YSCNKLNSYMRQTKKMTGRELDKYNLKIRQAALAVKKMDAEYRETNELLLT 209
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 48 DEVIMSLPYGPPQPVSP 98
D+V+MS P G P+P P
Sbjct: 523 DQVVMSKPAGGPKPPGP 539
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 24.6 bits (51), Expect = 4.5
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +1
Query: 25 NYILAFYSMKLSCLCRMVRHS 87
NY++A +S +++C+C + +S
Sbjct: 44 NYLMAGHSGRINCVCELATNS 64
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 165 LYNKMEASYREEEAKKKIIRDIELAKLKKKIDAEEKETIRLLET 296
LY EAS + A +K RD+ + L E K++ LLE+
Sbjct: 2420 LYILQEASINDR-ASEKCYRDLTVKSLNNSQQKEVKKSTGLLES 2462
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.8 bits (49), Expect = 7.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 162 KLYNKMEASYREEEAKKKIIRDIELAKLKKKIDAE 266
K Y KM E+E I D+ L L +K D E
Sbjct: 3023 KAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNE 3057
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 150 RGKQKLYNKMEASYREEEA 206
+GK++L NK+ SY EE A
Sbjct: 20 KGKKQLENKILHSYEEESA 38
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 151 RAYIIPAIKKANLKPLINGETGCG 80
R II A+ + L +I+G+TGCG
Sbjct: 637 RETIIDAVNNSQLL-IISGDTGCG 659
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 7.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 62 VFAVWSATACFTVD*RFEICLFNSRNYICSGQAKALQQNGSIV 190
V+ +WS+TAC F+I N+ CS Q L Q+ IV
Sbjct: 100 VYVIWSSTACINF---FDI---YQTNWHCSIQVSYLVQSLFIV 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,573
Number of Sequences: 5004
Number of extensions: 19488
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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