Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i09
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    29   0.47 
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   3.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.4  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   5.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.6  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 219 VTPDPGSLPLLSQTPSLVVKCDQEGDNTCKILCNALATATKAKGPEILCSRLKDVNELKL 398
           V PD  SL L +    L+   D+E DN  K++     +   A+   IL   + DV     
Sbjct: 267 VFPDAESLKLAASR--LLALADREADNNAKLIMLDRISQLAARDKSILEDLITDVIPFLS 324

Query: 399 SAFYKTCDK 425
           S+ +  C+K
Sbjct: 325 SSDFDVCEK 333


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 395 AFSFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVG 502
           A  FLQ++ +T+EL+K      + +  FP +S F+G
Sbjct: 131 AQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIG 166


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +2

Query: 467 LRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYFYE*MKVYKNYK*NELYLHLLHC 637
           LR   S  + +GG       T  K +  +  Q  F+E  K +  ++  ++YL    C
Sbjct: 512 LRTCKSRCIEIGGEQFSGFLTNIKPFEAVTFQKLFFEVGKGFSYFRPEQVYLETFFC 568


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 242 QTSRIWRHSRKSSARAVAFPVFEWG--DTNWYNFS 144
           +TS IW   R++ AR  A   + W   D+ WY+++
Sbjct: 505 ETSAIW--DRRARARRAAMEKYLWSEADSMWYDYN 537


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 130  LIPTNMRMQMSQKYTLKEPILCSFSMLNE 44
            LI + M +  S+KYT   P++ +++ L+E
Sbjct: 1192 LITSRMSVDFSEKYTQLIPVITTYTHLSE 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,008
Number of Sequences: 5004
Number of extensions: 54634
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)