Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3i07
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z49888-4|CAH60776.1|  742|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z49888-3|CAA90063.2|  759|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 223  GIITVLTIFFCLYLEIRKRKLDDMVENVLTVSQATDATLEVERGR 357
            GI  +  IFFC+   IRK+K     E  L + + +D   ++E  R
Sbjct: 1256 GISLIFVIFFCILWNIRKKKQAAHAER-LQLKEQSDRLNKLENER 1299


>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 187 VSQDVTWLQINAGIITVLTIFFCLYLEIRKRKLDDMVENVLTVSQAT 327
           V + + W  +   I  + ++F C+YL IR   + D+   ++     T
Sbjct: 229 VQKYIYWQTLTVFICKLQSVFLCIYLFIRASSITDITFGIVLTDIVT 275


>Z49888-4|CAH60776.1|  742|Caenorhabditis elegans Hypothetical
           protein F47A4.3b protein.
          Length = 742

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 396 IEKLHADLHRRGLTTTFYLQCGIGSLAHR 310
           +EK  A +  +G+ T  Y QCGI S   R
Sbjct: 280 VEKCCASIEDQGIVTGIYRQCGIQSNIQR 308


>Z49888-3|CAA90063.2|  759|Caenorhabditis elegans Hypothetical
           protein F47A4.3a protein.
          Length = 759

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 396 IEKLHADLHRRGLTTTFYLQCGIGSLAHR 310
           +EK  A +  +G+ T  Y QCGI S   R
Sbjct: 297 VEKCCASIEDQGIVTGIYRQCGIQSNIQR 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,346
Number of Sequences: 27780
Number of extensions: 265938
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)