Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h21
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445...    31   0.89 
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380     30   2.0  
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345...    28   6.2  

>04_04_0416 + 25042937-25043350,25044038-25044238,25044343-25044525,
            25044975-25045084,25045317-25045376,25045620-25045911,
            25046780-25046967,25047275-25048149,25048846-25049805,
            25050025-25050068,25050860-25050925,25051176-25051364
          Length = 1193

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 475  NSNEIIYFVILTLCSSVAGQVCSDGRSVTFVRWSGVTSE 591
            N+ E I   +   C  VAG+ C D  S T V W+GV S+
Sbjct: 1062 NTKETIRMNLSISCKDVAGENCFDENSAT-VLWAGVLSD 1099


>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
          Length = 411

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 563 LCDGPE*RQSERRQCSSTRLAAKKIP 640
           LC  P  R+S RR+CSST +  ++ P
Sbjct: 124 LCHHPTSRRSSRRRCSSTSITTRRPP 149


>10_01_0315 -
           3454846-3455465,3455562-3455663,3455828-3455954,
           3456698-3456727,3456828-3456877,3457004-3457106
          Length = 343

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 94  FYTYNYVNGVT*NCGALIMRCKSIC 20
           FYT NYV+GVT   GA+  +   +C
Sbjct: 283 FYTANYVDGVTGKGGAVYGKHSGVC 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,891,351
Number of Sequences: 37544
Number of extensions: 281756
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)