Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h21
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 55  NSKLRRSRNYTYKNNSVFKIGNRNQTYVDSTLQFERFEIFIEAFVMFVQMF 207
           N  +  + NY Y  N+ +   N N    +  L ++ + I IE   + V ++
Sbjct: 87  NKTIHNNNNYKYNYNNKYNYNNNN---YNKKLYYKNYIINIEQIPVPVPVY 134


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 86  RIKTTVYLKLVIEIKLTSIQHYSSNDLKYL*RH 184
           R+   VY +++   KLT I + +  ++KYL  H
Sbjct: 36  RVTMYVYEEIINGKKLTEIINETHENVKYLPGH 68


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 14  PATYRLASHY*CTAILSYAV 73
           PAT + A +Y C A   YAV
Sbjct: 89  PATQKDAGYYECQADNQYAV 108


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 522 SCGPSVQRRAVGDICAMV 575
           SCGP+V  R V  + AM+
Sbjct: 72  SCGPNVYNRGVQRLEAML 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,936
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)