Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h16
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   4.7  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   4.7  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   6.2  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   6.2  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.2  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   6.2  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   8.2  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   8.2  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 369 FGVQNDNKLKSLLKPFIKRGRETIPDNSLPPHHKIDLSSVMDNFQS 506
           F   ND      LK  ++  R T+P+ S P  H  DL  ++++ +S
Sbjct: 224 FPQMNDWDKVVALKTLVRYARLTLPEPSTPSTHS-DLKELLESIKS 268


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 KERRLLQYCD*RYNKIS*RDKCAREKDFDP 295
           + +R +QYC  RYN++  RD   +  D DP
Sbjct: 173 QNQRQIQYCIQRYNELV-RDLIGKACDLDP 201


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = -2

Query: 433 SLPLFMNGLRRLFNLLSFCTPKKPSALSTCF--STVSTLFDKNINTLD-RVEIL 281
           ++P+F++GL R+  L  F T  KP  ++T     T  +   +++ T+D +V +L
Sbjct: 716 NIPVFVDGLYRVDYLDLFLTSLKPENVTTGMYSDTSKSQSQQSVTTIDNKVNLL 769


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 57  RLNMLEDIAIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKL 206
           R   L+ + +  +   K++ +    T  D+ DN++ R+E L +V  +  L
Sbjct: 60  RFKNLQSLCLRQNQIKKIESVPETLTELDLYDNLIVRIENLDNVKNLTYL 109


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 183 SSIPPASLTCCQQHLELF*ILPTRPL*NMLNNQLLYPP 70
           SS P       Q HL L+    + P  N+ +N+L+YPP
Sbjct: 210 SSPPSQDYQNDQNHLILYTNSESIPKLNLRSNELVYPP 247


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 54  RRLNMLEDIAIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCCNIV 233
           R  N  E +  D +T    D  E +  + +    +       TSVL+   + N   CN+ 
Sbjct: 17  RMFNFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKHHNVSNTSYCNLS 76

Query: 234 TEDIIKYRREI-NVLGKRI 287
               IK+  ++ + L KR+
Sbjct: 77  PSLFIKFAEDVLSNLAKRV 95


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 333 TVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRETIPDNSLPP 461
           T +  +ERA  +   +  ++ K+++ PFI R R+    + LPP
Sbjct: 610 TSDGDIERA--YLSQERISRAKTIMNPFILRRRKENVLSDLPP 650


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 285 ISTLSNVLMFLSNNVDTVEKQVERAEGFFGVQNDN--KLKSLLKPFIKRGRETIPDN 449
           I+ L   L   +  ++  +K  E  +    + N     LKS L P++K+G +   DN
Sbjct: 105 INVLQQELKVETARLENEQKSYEEMKQNMAINNSRLADLKSKLHPYLKKGLKISHDN 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,148
Number of Sequences: 5004
Number of extensions: 48094
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)