Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3h16
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0008 + 9296711-9298096 32 0.39
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223... 30 1.6
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 29 2.1
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468... 28 4.8
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289... 28 6.3
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796... 27 8.4
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 27 8.4
>04_03_0008 + 9296711-9298096
Length = 461
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 366 FFGVQNDNKLKSLLKPFIKRGRETIPDNSLPPHHKIDLSSVMDNF 500
FF + N L+ + F + E+IP+ PHH +D S ++ NF
Sbjct: 7 FFPMGKTNALRGRISNFQQTRDESIPEAWERPHHGMDNSLILQNF 51
>10_08_0999 +
22121029-22121235,22121819-22122082,22122123-22122324,
22122456-22122590,22122668-22122778,22122871-22122959,
22123237-22123299,22123461-22123636,22123785-22123887,
22124286-22124461,22124625-22124733,22124851-22124943,
22126294-22126435,22126655-22126671
Length = 628
Score = 29.9 bits (64), Expect = 1.6
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +3
Query: 198 VKLKNGDC--CNIVTEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEGFF 371
VK K D C +V +K RR +NV GK +TL ++ + + ++ VE F+
Sbjct: 232 VKSKTADTVKCEVVDGGELKSRRHLNVRGKS-ATLPSI---TEKDWEDIKFGVENGVDFY 287
Query: 372 GVQ--NDNKLKSLLKPFIKRGRETIPDNSLPPHHKIDLSSVMDNFQSM 509
V D K+ LK ++K I + +P KI+ + + N QS+
Sbjct: 288 AVSFVKDAKVIHELKDYLKSANADI--HVIP---KIESADSIPNLQSI 330
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 318 SNNVDTVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRETIP 443
++ ++ + + AE FF Q NKL + + F+K G+E IP
Sbjct: 339 ADRMNKISLECSNAEDFF--QQLNKLNATYEEFVKLGKEAIP 378
>07_01_0627 +
4685077-4685155,4685978-4686336,4686761-4686862,
4687528-4687598,4687871-4687989,4688327-4688422,
4688527-4688636,4688734-4688814,4689124-4689224,
4689663-4689771,4689971-4690076,4690140-4690225,
4690324-4690449,4690816-4690902
Length = 543
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 48 FWRRLNMLEDIAIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGD 218
FWR + + ++ +K D+ + + D+V+ M +R+ ++ VL L +G+
Sbjct: 404 FWRIREGISEASVKVGAVYKYDLSIPVEKLYDIVEEMRSRVGDMGQVLGYGHLGDGN 460
>05_07_0063 -
27428056-27428184,27428321-27428460,27428698-27428926,
27429231-27429281,27429411-27429636,27430230-27430300,
27430466-27430585,27430671-27430865,27431088-27431152,
27431232-27431322,27431607-27431707,27431767-27431817,
27432076-27432177,27432406-27432510,27432600-27432663,
27433023-27433151
Length = 622
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 135 VQDVVDNMLTRLEELTSVLQMVKLKNGDCCNIVTEDIIKYRREINVLGKRISTLSNVLMF 314
VQD+ + + + +E+ ++ V N D + T D IK RE++ G+R + +
Sbjct: 171 VQDIENMVRSFIEKPNCIILAVSPANQD---LATSDAIKISREVDPKGERTFGVLTKIDL 227
Query: 315 LSNNVDTVE 341
+ D V+
Sbjct: 228 MDKGTDAVD 236
>03_06_0568 -
34778408-34778710,34779340-34779411,34779549-34779635,
34779722-34779880,34780641-34780739,34780823-34780903,
34781007-34781461,34781550-34781679,34781952-34782743
Length = 725
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 369 KNLQLSLLVFQLYQHYLIKTLIHWTG-SKSFSLAHLSLYDILLYLQSQYCSNRRS 208
K+ + +LLV LY Y K + W G S +L+ +S D+L+ L N +S
Sbjct: 314 KHERFALLVTCLYSMYCAKNYVGWLGLLLSLNLSFIS-SDVLVQLLKNNVDNNKS 367
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 27.5 bits (58), Expect = 8.4
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +3
Query: 135 VQDV-VDNMLTRLEELTSVLQMVKLKNGDCCNIVTEDIIKYRREINVLGKRISTLSNVLM 311
V DV V +ML + S+L K ++ C ++ +K RR +NV GK +TL ++
Sbjct: 247 VNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVIDGGELKSRRHLNVRGKS-ATLPSI-- 303
Query: 312 FLSNNVDTVEKQVERAEGFFGVQ--NDNKLKSLLKPFIKRGRETI 440
+ D ++ VE ++ V D ++ LK +++ I
Sbjct: 304 -TDKDWDDIKFGVENQVDYYAVSFVKDAQVVHELKDYLRSSNADI 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,441
Number of Sequences: 37544
Number of extensions: 260350
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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