Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3h16
(587 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC056900-1|AAH56900.1| 1504|Homo sapiens nischarin protein. 30 5.3
BC054494-1|AAH54494.1| 1504|Homo sapiens nischarin protein. 30 5.3
BC038102-1|AAH38102.1| 1504|Homo sapiens nischarin protein. 30 5.3
AF082516-1|AAC33104.1| 1504|Homo sapiens I-1 receptor candidate ... 30 5.3
AB023192-1|BAA76819.1| 1528|Homo sapiens KIAA0975 protein protein. 30 5.3
BC146835-1|AAI46836.1| 716|Homo sapiens Unknown (protein for MG... 30 7.0
AB046861-1|BAB13467.1| 718|Homo sapiens KIAA1641 protein protein. 30 7.0
>BC056900-1|AAH56900.1| 1504|Homo sapiens nischarin protein.
Length = 1504
Score = 30.3 bits (65), Expect = 5.3
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 141 DVVDNMLTRLEELTSVLQMVKLKNGDCCNIVTEDIIKYRREINV-LGKRISTLSNVLMFL 317
D+ DN + ++EE+ S+ + L++ N I YR ++ G+R S + L
Sbjct: 383 DLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVC-----L 437
Query: 318 SNNVDTVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRE 434
+ V T EK+++ E +Q ++KS L K+G E
Sbjct: 438 DDTV-TTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGE 475
>BC054494-1|AAH54494.1| 1504|Homo sapiens nischarin protein.
Length = 1504
Score = 30.3 bits (65), Expect = 5.3
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 141 DVVDNMLTRLEELTSVLQMVKLKNGDCCNIVTEDIIKYRREINV-LGKRISTLSNVLMFL 317
D+ DN + ++EE+ S+ + L++ N I YR ++ G+R S + L
Sbjct: 383 DLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVC-----L 437
Query: 318 SNNVDTVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRE 434
+ V T EK+++ E +Q ++KS L K+G E
Sbjct: 438 DDTV-TTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGE 475
>BC038102-1|AAH38102.1| 1504|Homo sapiens nischarin protein.
Length = 1504
Score = 30.3 bits (65), Expect = 5.3
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 141 DVVDNMLTRLEELTSVLQMVKLKNGDCCNIVTEDIIKYRREINV-LGKRISTLSNVLMFL 317
D+ DN + ++EE+ S+ + L++ N I YR ++ G+R S + L
Sbjct: 383 DLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVC-----L 437
Query: 318 SNNVDTVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRE 434
+ V T EK+++ E +Q ++KS L K+G E
Sbjct: 438 DDTV-TTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGE 475
>AF082516-1|AAC33104.1| 1504|Homo sapiens I-1 receptor candidate
protein protein.
Length = 1504
Score = 30.3 bits (65), Expect = 5.3
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 141 DVVDNMLTRLEELTSVLQMVKLKNGDCCNIVTEDIIKYRREINV-LGKRISTLSNVLMFL 317
D+ DN + ++EE+ S+ + L++ N I YR ++ G+R S + L
Sbjct: 383 DLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVC-----L 437
Query: 318 SNNVDTVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRE 434
+ V T EK+++ E +Q ++KS L K+G E
Sbjct: 438 DDTV-TTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGE 475
>AB023192-1|BAA76819.1| 1528|Homo sapiens KIAA0975 protein protein.
Length = 1528
Score = 30.3 bits (65), Expect = 5.3
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 141 DVVDNMLTRLEELTSVLQMVKLKNGDCCNIVTEDIIKYRREINV-LGKRISTLSNVLMFL 317
D+ DN + ++EE+ S+ + L++ N I YR ++ G+R S + L
Sbjct: 407 DLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVC-----L 461
Query: 318 SNNVDTVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRE 434
+ V T EK+++ E +Q ++KS L K+G E
Sbjct: 462 DDTV-TTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGE 499
>BC146835-1|AAI46836.1| 716|Homo sapiens Unknown (protein for
MGC:167812) protein.
Length = 716
Score = 29.9 bits (64), Expect = 7.0
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +3
Query: 192 QMVKLKNGDCCNIVTEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEGFF 371
+++KLK+ C + + I K + + +VL KRIS + L + + +EK++ F
Sbjct: 231 RLIKLKDNHCEQLRVK-IRKLKNKASVLQKRISEKEEIKSQLKHEILELEKELCSLR--F 287
Query: 372 GVQNDNKLKSLLKPFIKRGRETI 440
+Q + K + ++ ++ RE +
Sbjct: 288 AIQQEKKKRRNVEELHQKVREKL 310
>AB046861-1|BAB13467.1| 718|Homo sapiens KIAA1641 protein protein.
Length = 718
Score = 29.9 bits (64), Expect = 7.0
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +3
Query: 192 QMVKLKNGDCCNIVTEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEGFF 371
+++KLK+ C + + I K + + +VL KRIS + L + + +EK++ F
Sbjct: 233 RLIKLKDNHCEQLRVK-IRKLKNKASVLQKRISEKEEIKSQLKHEILELEKELCSLR--F 289
Query: 372 GVQNDNKLKSLLKPFIKRGRETI 440
+Q + K + ++ ++ RE +
Sbjct: 290 AIQQEKKKRRNVEELHQKVREKL 312
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,957,721
Number of Sequences: 237096
Number of extensions: 1499835
Number of successful extensions: 2975
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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