Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h15
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386           29   5.0  
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174...    28   6.6  

>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
          Length = 1066

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 11  ILVMVEFVICCIRVVLMKKIRPGKASQKVRSSISKNVVQQY 133
           I+++V  V CC+ V++ KK++  K S  +  ++S  ++  +
Sbjct: 721 IIIVVGAVACCLYVMIRKKVKHQKISTGMVDTVSHQLLSYH 761


>02_05_0769 +
           31616644-31616875,31616980-31617203,31617308-31617426,
           31617528-31617684,31617928-31618029,31618111-31618230,
           31618761-31618855,31619900-31619984,31620090-31620180,
           31620534-31620618,31620702-31620806,31621019-31621894,
           31622016-31622124,31622266-31622414,31622518-31622737
          Length = 922

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 632 CKQSNSLFQKQTKKLRILLVGTQCNPIR 549
           C  +N  F+K+T K+R +LVG  C+  R
Sbjct: 17  CTGANFGFEKRTSKVRFVLVGRCCSGTR 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,926
Number of Sequences: 37544
Number of extensions: 288594
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)