Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h15
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77970-1|AAB47250.1|  824|Homo sapiens neuronal PAS2 protein.          30   7.4  
EF015903-1|ABM64214.1|  824|Homo sapiens neuronal PAS domain pro...    30   7.4  
BC072383-1|AAH72383.1|  824|Homo sapiens neuronal PAS domain pro...    30   7.4  
BC051351-1|AAH51351.2|  824|Homo sapiens neuronal PAS domain pro...    30   7.4  
AC016738-1|AAY14822.1|  813|Homo sapiens unknown protein.              30   7.4  

>U77970-1|AAB47250.1|  824|Homo sapiens neuronal PAS2 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 537 LPGSIVPCDAGQPSSLYITGSHIKYKLTKTI 445
           +PGS   CDA QPS +  TG  +KY  ++T+
Sbjct: 684 MPGS---CDARQPSEVSRTGRQVKYAQSQTV 711


>EF015903-1|ABM64214.1|  824|Homo sapiens neuronal PAS domain
           protein 2 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 537 LPGSIVPCDAGQPSSLYITGSHIKYKLTKTI 445
           +PGS   CDA QPS +  TG  +KY  ++T+
Sbjct: 684 MPGS---CDARQPSEVSRTGRQVKYAQSQTV 711


>BC072383-1|AAH72383.1|  824|Homo sapiens neuronal PAS domain
           protein 2 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 537 LPGSIVPCDAGQPSSLYITGSHIKYKLTKTI 445
           +PGS   CDA QPS +  TG  +KY  ++T+
Sbjct: 684 MPGS---CDARQPSEVSRTGRQVKYAQSQTV 711


>BC051351-1|AAH51351.2|  824|Homo sapiens neuronal PAS domain
           protein 2 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 537 LPGSIVPCDAGQPSSLYITGSHIKYKLTKTI 445
           +PGS   CDA QPS +  TG  +KY  ++T+
Sbjct: 684 MPGS---CDARQPSEVSRTGRQVKYAQSQTV 711


>AC016738-1|AAY14822.1|  813|Homo sapiens unknown protein.
          Length = 813

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 537 LPGSIVPCDAGQPSSLYITGSHIKYKLTKTI 445
           +PGS   CDA QPS +  TG  +KY  ++T+
Sbjct: 673 MPGS---CDARQPSEVSRTGRQVKYAQSQTV 700


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,665,847
Number of Sequences: 237096
Number of extensions: 1724238
Number of successful extensions: 2310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2310
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)