Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h15
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine rec...    25   4.2  
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    28   7.9  

>U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein200 protein.
          Length = 343

 Score = 25.4 bits (53), Expect(2) = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 NFVCIETWKRPWEY 280
           N VC  +WKR W+Y
Sbjct: 124 NTVCTFSWKRKWKY 137



 Score = 21.8 bits (44), Expect(2) = 4.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 260 WKRPWEYNNGILMKLANFKIKF 325
           W+RPW   N +++ L    I F
Sbjct: 138 WRRPWLVANHVIVLLFVIPIGF 159


>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical
           protein H08M01.2b protein.
          Length = 1341

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/90 (22%), Positives = 43/90 (47%)
 Frame = -1

Query: 711 YETIKGTDLKSQCFKKNKELSNN*LRMQTKQFFVSKTNKKITNTFGRHAM*SNQNIY*LP 532
           +ETI G        ++  + S   L+ + K  ++ K    + + F +  + + +  + + 
Sbjct: 111 FETIAGCSKSENYCQRCCQTS---LQSRDKLMYIQKEQLGLESEFPQQLLPNGK--FNVD 165

Query: 531 GSIVPCDAGQPSSLYITGSHIKYKLTKTIS 442
           G I+ CD  +P+S ++  SH+   + K IS
Sbjct: 166 GFILACDISKPTSAHLHSSHV-LNIAKAIS 194


>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical
           protein H08M01.2a protein.
          Length = 1320

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/90 (22%), Positives = 43/90 (47%)
 Frame = -1

Query: 711 YETIKGTDLKSQCFKKNKELSNN*LRMQTKQFFVSKTNKKITNTFGRHAM*SNQNIY*LP 532
           +ETI G        ++  + S   L+ + K  ++ K    + + F +  + + +  + + 
Sbjct: 111 FETIAGCSKSENYCQRCCQTS---LQSRDKLMYIQKEQLGLESEFPQQLLPNGK--FNVD 165

Query: 531 GSIVPCDAGQPSSLYITGSHIKYKLTKTIS 442
           G I+ CD  +P+S ++  SH+   + K IS
Sbjct: 166 GFILACDISKPTSAHLHSSHV-LNIAKAIS 194


>Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical
           protein R03D7.8 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 366 PVLVEAITSCIKRRNLILKFASFIRIPLLYSHGRFHVSMQTKFYVN 229
           PV+  A+ SCIKR    + FA+ I   +L  +  F   ++ K +++
Sbjct: 440 PVITRAVQSCIKRMCTHMPFAAIIGKSVLAVYSGFSPMIREKGHIH 485


>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 667 KKQRALQQLTKNANKAILCFKNKQKNYEYFWSARNVIQSEY 545
           +KQRA  +     +K  +  KNK+K  +YF  A   +Q EY
Sbjct: 18  RKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQ-EY 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,511
Number of Sequences: 27780
Number of extensions: 295518
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)