Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h11
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    30   0.37 
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    29   0.64 
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.85 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    28   1.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   2.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   6.0  

>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 265 NIIQTIIESITNALPIKLSRRTTPPK-KESPMKIETLQKFAPELVPKNTVE 414
           + +Q I+E + +A PIK  R+T  P+ + +  + E  +    + V KNTV+
Sbjct: 93  DFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVK 143


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +1

Query: 337 PKKESPMK---IETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTE 507
           PKKE+ +    +  LQ+ +   + K   EI+ I    LE+V+ + ++ N+I+ T+V VT 
Sbjct: 283 PKKENIIPKYYLRYLQRLSRTEINK---EIIEIEKLELEVVQFQMSIANLIN-TQVEVTN 338

Query: 508 TI 513
           TI
Sbjct: 339 TI 340


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +1

Query: 511 IAKNSSFKIPKMPLVNSEVLKNAIEKRKKSL--MKDASMNTNTDHDIAAE-LTKHVGTLR 681
           + K +SF+ P + +  + VL+ ++EKRK ++  +KD  M  N    I  E +  H  T+ 
Sbjct: 21  LMKRNSFRRPLLNMRCNSVLQYSLEKRKLTVQDLKDTRMELNNMIRILTEAMAAHEWTVD 80

Query: 682 KISL 693
            +++
Sbjct: 81  NVNI 84


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 695 IRDIFRRVPTCLVNSAAIS*SVFVFIDAS 609
           I  +F  VPTC++ S  +S  V +F DA+
Sbjct: 421 IMPVFSTVPTCMLASMVVSLGVSLFADAA 449


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
 Frame = +1

Query: 283 IESITNALPIKLSRRTTPPKKESPMKIETL-QKFAPELVPKNTVEIVSIPNQV--LEIVE 453
           +ES+  A+ + + +R    + +S +++  +      +LVP        +P  +  +E + 
Sbjct: 248 VESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPDPAEASDFLPELIPDVERIA 307

Query: 454 AEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNTNT 633
              A+  V ++   ++T T+ K ++ +  K    NSE  K A++   K L +    NT+ 
Sbjct: 308 QTAAMPEVRALASHALT-TLNKAAAAQAAKAAN-NSE--KQALDSACKELREAVLKNTSV 363

Query: 634 DHDIAAELTKHV 669
            H++A  +  +V
Sbjct: 364 PHELANSIIDYV 375


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 285 RKYHKRVTHKVIKKD 329
           R YHK V+HK+++ D
Sbjct: 306 RSYHKEVSHKIVRID 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,624
Number of Sequences: 5004
Number of extensions: 43890
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)